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Detailed information on CNT30261343


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJU4|ALFP1_ARATH, E-value = 5e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524157Brassica rapaSetaria italica21.939.5282.76116forward
CNT30494492Brassica rapaOlea europaea20.621.6783.49109forward
CNT30538767Brassica rapaBrassica napus41.9754.1592.79222forward
CNT30439071Brassica rapaAegilops tauschii12.6720.0689.5567forward
CNT30664005Brassica rapaTriticum dicoccoides20.0423.8285.85106forward
CNT30462400Brassica rapaSaccharum spontaneum29.8711.6181.01158forward
CNT307142Brassica rapaZea mays28.3611.9882150forward
CNT30207455Brassica rapaHelianthus annuus28.732384.21152forward
CNT30338292Brassica rapaEragrostis tef18.5330.6382.6598forward
CNT30479625Brassica rapaArabidopsis halleri38.7561.9394.15205forward
CNT30319836Brassica rapaAsparagus officinalis23.0615.2982.79122forward
CNT3037127Brassica rapaCucumis melo43.8643.0480.17232forward
CNT30557232Brassica rapaPanicum hallii23.6318.882.4125forward
CNT30334895Brassica rapaCynara cardunculus17.222.3690.1191forward

Expression of CNT30261343

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSSSKCSARHVHRRRTRAMGSVLGSLRSGSRSPPTRTVHQ

>peptide 2 (60 aa)
IKFDRFIRLVNINSHWPVYSLIGIPWKYLSGIFTSWYKEYKTIILTTMKKNKTSHIRRVL*

Sequence

>CNT30261343
ATCAAGTTTGATAGGTTTATAAGACTTGTTAACATCAACTCTCATTGGCCGGTTTACTCTCTTATAGGCATTCCATGGAAATACCTCTCAGGCATATTTA
CGAGTTGGTACAAAGAGTACAAAACGATCATATTAACGACGATGAAAAAAAACAAAACTAGTCACATAAGAAGAGTATTATAATAACTCAAACACCAAAA
TCAAGCTCAAGCTCAAGTTTTGAGTTTTGGTCAACGGAACCATTCATACAAAATAGCTTAATAGGTGTAGCCTTTTACAAACATACCCTCCTTGGCATCC
TCGGACTCACCTTCCCCTGTGTATTTCCCAAGCTGTGCCAACGAGTTGGCTTTGGCTCTGGTCAAGAGAGTGTCCTGAGCCGCCTTCACGTTCTCTTCTC
TGCCTCCCCATGTCTTCAAGCAAGTGTTCTGCAAGGCACGTGCATAGGAGAAGGACACGTGCCATGGGTTCGGTCCTTGGTTCATTGCGTTCAGGTTCAA
GGTCGCCTCCAACTCGGACTGTCCACCAG