Detailed information on CNT30676761


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 8e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377016Setaria viridisArabidopsis thaliana25.722.883.1383forward
CNT30223084Setaria viridisHordeum vulgare47.3719.6289.54153forward
CNT30588905Setaria viridisMusa acuminata41.4951.9482.09134forward
CNT30139084Setaria viridisLolium perenne52.6320.2993.53170forward
CNT3017013Setaria viridisZea mays53.8727.7195.4174forward
CNT3068263Setaria viridisLeersia perrieri51.0821.6894.55165forward
CNT30338292Setaria viridisEragrostis tef51.0851.5693.33165forward
CNT30367530Setaria viridisSorghum bicolor52.0149.4194.64168forward
CNT30150970Setaria viridisBrachypodium distachyon50.4667.6388.34163forward
CNT30595262Setaria viridisEragrostis curvula51.723.1394.61167forward

Expression of CNT30676761

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLLSSEVQLSSGWQWPQVHTSEQRMECLLP

>peptide 2 (67 aa)
QYVSSELLADELVAVVLDEHALLGLGGLAVGGVLAELRQRVGLGAQQQRVLRRLDVLRHAAPRLEAG*

>peptide 3 (87 aa)
MPSLASAASPSEVYLPSCASELALARSSSASCAALTFSGTPPHVLRQGSRGHLLLPRCSCCLLKFSSAQAGSGLRFTPVNNEWSVSFL

Sequence

>CNT30676761
CCAGTATGTATCGTCGGAGTTGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTA
CTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGTTCTCCGGCACGCCGCCCCACGTCTTGAGGCAG
GGTAGCAGAGGCCATCTTCTTCTTCCTCGATGCTCTTGCTGTCTTCTGAAGTTCAGCTCAGCTCAGGCTGGCAGTGGCCTCAGGTTCACACCAGTGAACA
ACGAATGGAGTGTCTCCTTCCTT