Detailed information on CNT30542943


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZU52|ALFP3_ARATH, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536152Brassica napusEucalyptus grandis41.1639.9680.1191reverse complement
CNT30374484Brassica napusArabidopsis thaliana36.4239.7691.12169forward
CNT30269395Brassica napusChenopodium quinoa35.345.2881.71164forward
CNT3019571Brassica napusCitrullus lanatus51.0823.4778.9237forward
CNT306434Brassica napusZea mays35.3465.0879.88164forward
CNT30338292Brassica napusEragrostis tef14.2220.6289.3966forward
CNT30481517Brassica napusChara braunii15.7324.1786.373forward

Expression of CNT30542943

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MAFSDSLGRGLVLVLSTWGNHAGLQQYALEHNIVLRQVEEHLRPHFLSNLQRPLNRVVTIQKNLWLHYRHKP

Sequence

>CNT30542943
TGGGACCAAATTTAAAACAAATCAGTAGGTGTAACCCTTGACAAACATTCCTTTCTTGGCATCTTCATTCTCTCCCTCCGCTGAGTATTTCCCGAGCTGT
GCCAGTGAGTTGGCCTTTGCCCTAACCAAGAGAGCCTTCTGCGAGTCCTCGATCTTCTCGGGTTTCCCTTGCCACGTCCTGAGCACAGAGTTCTGCAGGG
CACGCGCGTAGGAGAAGGACACATGCCACGGGTTTGGGCTCTGGTTCATGGCGTTCAGCGACAGTCTCGGGAGAGGCCTTGTTCTTGTGCTCAGCACCTG
GGGTAACCATGCTGGGCTTCAACAATATGCCCTCGAACATAACATTGTTCTGCGCCAAGTAGAAGAACACCTCAGACCACACTTTCTCAGCAACCTCCAG
CGTCCTCTCAATCGGGTGGTCACCATCCAGAAGAATCTCTGGCTCCACTATAGGCACAAGCCCG