Detailed information on CNT30588905


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676761Musa acuminataSetaria viridis51.9441.4982.09134forward
CNT30524148Musa acuminataSetaria italica51.9420.3382.09134forward
CNT30610723Musa acuminataGossypium raimondii26.7413.3789.8669forward
CNT30338292Musa acuminataEragrostis tef51.9441.8884.33134forward
CNT30367530Musa acuminataSorghum bicolor39.533082.35102forward
CNT30371242Musa acuminataOryza glumipatula49.2219.3981.89127forward
CNT30595262Musa acuminataEragrostis curvula51.9418.5683.58134forward
CNT30557232Musa acuminataPanicum hallii51.9420.1582.09134forward

Expression of CNT30588905

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RLKHSTTSIVVFLEQTGNQNPQRYRRYHALLGSQ*

>peptide 2 (39 aa)
AGLNIQLHRSSSSLNRPVIKIHRDIEDIMLCWVLSSCSS*

Sequence

>CNT30588905
GCAGGCTTAAACATTCAACTACATCGATCGTCGTCTTCCTTGAACAGACCGGTAATCAAAATCCACAGAGATATAGAAGATATCATGCTTTGCTGGGTTC
TCAGTAGCTGTAGTTCTTGACGTACATCCCCTCTTTAGCTTCTGCAGCTTCGCCCTCGGCTGAGTACTTCCCGAGCTGAGCGAGCGAGTTGGCCTTGGCC
CGGACTAGGAGCACATCCTGCGCAGCCTTCACGTTCAGGGTTGCCTCCACTTCCGACT