Detailed information on CNT3010240


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-101

BLAST vs NONCODE:
NONGMAT000220, E-value = 2e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677947Zea maysSetaria viridis42.6460.1594.5400forward
CNT30521842Zea maysSetaria italica42.1142.894.68395forward
CNT30640127Zea maysNymphaea colorata55.2264.9181.85518forward
CNT30517675Zea maysJuglans regia25.9140.2383.95243forward
CNT3071006Zea maysQuercus suber27.0852.5983.07254forward
CNT30712809Zea maysGlycine max32.5291.0484.92305forward
CNT30296175Zea maysTriticum aestivum20.7966.7892.82195forward
CNT30223592Zea maysHordeum vulgare19.5146.9290.16183forward
CNT30237104Zea maysBrassica oleracea19.1955.5685.56180forward
CNT3075316Zea maysBrassica juncea27.6187.2183.78259forward
CNT30445136Zea maysSaccharum spontaneum35.1846.8893.64330forward
CNT30606894Zea maysGossypium raimondii34.1287.6784.69320forward
CNT30721351Zea maysTriticum spelta44.8863.685.75421forward
CNT30340361Zea maysEragrostis tef18.0232.3194.08169forward
CNT30362155Zea maysSorghum bicolor42.6436.6694400forward
CNT30575645Zea maysOryza barthii35.0738.891.19329forward
CNT3040082Zea maysMarchantia polymorpha28.0462.6282.89263forward

Expression of CNT3010240

Peptides detected in this lncRNA

>peptide 1 (86 aa)
NRQKHNTIGATQGRSQDSSGTQARRRRASRASSTRHPRRRPHPRQTQHRPPRSPSQAPPDPHEPRRTRPPPYPHRRTSARRRAWRT*

>peptide 2 (31 aa)
MRSRHRSTKTARGTCFPAPVSLKKVLKASSPP

>peptide 3 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTDVDTWGDGYTVKPSLDFLP*

>peptide 4 (73 aa)
MAGVALGHHGGWLEGAVGDFSHGQLLVVGLLSRNDWSVGRKHEVDPRVGHQVGLELVHINVQSTIEPQGSRQG*

>peptide 5 (36 aa)
MRQHAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT3010240
AGAACCGACAGAAACATAACACGATAGGAGCCACTCAGGGCAGATCACAGGATAGCAGTGGCACACAAGCCCGACGACGCCGCGCCAGTAGAGCGTCTAG
TACTCGTCACCCTCGTCGCCGTCCTCACCCTCGTCAAACTCAGCACCGACCTCCTCGTAGTCCTTCTCAAGCGCCGCCAGATCCTCACGAGCCTCGGAGA
ACTCGCCCTCCTCCATACCCTCACCGACGTACCAGTGCACGAAGGCGCGCTTGGCGTACATGAGGCAGCATGCCATGTACTTGCCATGGCGGGGGTCGCA
CTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATTTCAGCCACGGACAGCTGCTCGTGGTAGGCCTTCTCAGCAGAAATGACTGGAGCGTAG
GACGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTCACATCAACGTTCAGAGCACCATCGAACCTCAGGGAAGCCGTCA
GGGATGAGATGACCTGAACAACATCAGTAAGAGCCAATGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCA
GGACAGCAACATCAGTGTGCTCGAGGAGAGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACGGATGTGGACACCTGGGGGGATGGGTACACGGT
GAAACCGAGCTTGGACTTCTTGCCATAGTCAACAGACAGGCGCTCCAGGAGGAGAGAACCAAGCCCAGAGCCCGTTCCTCCACCAACAGCGTTGAAGACG
AGGAAGCCCTGGAGACCAGTGCAATTATCTGCAAGCTTCCTGATGCGGTCAAGGCACAGGTCAACAAAAACAGCACGGGGGACGTGCTTCCCAGCGCCAG
TCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCC