Detailed information on CNT30263293


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Brassica rapaOryza sativa37.85.0487.34158forward
CNT30550263Brassica rapaIpomoea triloba38.041.3891.82159reverse complement
CNT30637323Brassica rapaCapsicum annuum40.9112.1190.64171reverse complement
CNT3098505Brassica rapaSolanum tuberosum43.318.4588.95181forward
CNT30304298Brassica rapaTriticum aestivum39.476.2487.27165forward
CNT30221574Brassica rapaHordeum vulgare39.4714.387.27165forward
CNT30400948Brassica rapaTriticum turgidum39.476.686.67165forward
CNT30585815Brassica rapaMusa acuminata29.95.1588.8125reverse complement
CNT30435015Brassica rapaAegilops tauschii39.4714.6487.27165forward
CNT30314095Brassica rapaCamelina sativa85.8923.9386.63359forward
CNT30139202Brassica rapaLolium perenne39.476.4687.27165forward
CNT30655299Brassica rapaRosa chinensis34.695.1193.1145reverse complement
CNT30210912Brassica rapaHelianthus annuus37.087.2792.9155reverse complement
CNT30595506Brassica rapaOryza meridionalis28.4710.8289.08119forward
CNT30420891Brassica rapaPapaver somniferum26.324.184.55110forward
CNT3039297Brassica rapaCucumis melo22.253.5291.493reverse complement
CNT30575706Brassica rapaOryza barthii37.86.4885.44158reverse complement

Expression of CNT30263293

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSPEQSQYIWRKTIPRIKVGMGSGVSRLTVVPSLS*

>peptide 2 (31 aa)
MAQDDSTYQSWNGIRCFTSHRSAQFVLISDC*

>peptide 3 (31 aa)
MERLYFVVTRARYIVTTSPQSKIPPWYASTTP

Sequence

>CNT30263293
TATATGTCGCTCTATTAACAGAGCCGTGTATACCGGAAAAAAAAGAAAAGCGTTATCGGGTTTGAACAACTGAGTTGTTACAATGTTCTTTTTCATTTTA
ATAAAGTGACTCCTCTTCTTTCAGTCACTTCGTACCTCTTCTTAAGAAAGATTCAATTTGCATTTCATTCTTTCACCGGGCTTAGACCATGTCTCCCGAA
CAATCTCAGTACATATGGCGCAAGACGATTCCACGTATCAAAGTTGGAATGGGATCAGGTGTTTCACGTCTCACCGTAGTGCCCAGTTTGTCTTGATTTC
CGATTGCTGAACAAGAAGTCAAATGGAACGATTGTATTTTGTTGTGACCCGCGCCCGCTACATTGTTACGACTTCACCCCAGTCGAAGATTCCACCGTGG
TATGCGTCAACAACTCCA