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Detailed information on CNT30221574

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30670953	Hordeum vulgare	Setaria viridis	16.12	20.15	99.46	186	forward
CNT30158473	Hordeum vulgare	Pistacia vera	5.29	27.98	100	61	reverse complement
CNT3098505	Hordeum vulgare	Solanum tuberosum	18.8	22.12	95.39	217	forward
CNT30435015	Hordeum vulgare	Aegilops tauschii	38.65	39.57	99.33	446	forward
CNT30263293	Hordeum vulgare	Brassica rapa	14.3	39.47	87.27	165	forward
CNT30721611	Hordeum vulgare	Triticum spelta	19.41	48.59	99.55	224	forward
CNT30360998	Hordeum vulgare	Lactuca sativa	15.6	62.07	98.33	180	reverse complement
CNT30418817	Hordeum vulgare	Papaver somniferum	8.93	48.58	95.15	103	reverse complement

Expression of CNT30221574

Peptides detected in this lncRNA

>peptide 1 (80 aa)
GSQPEPIFLCYILFFLCQLAQFGFRVQCANAFFSFIALSPGFDHVSRTISVHMAQDDSTYISRSEWDRVFSRLTVVPGLS*

>peptide 2 (43 aa)
MGDHWSDASGETNSQGVTGGVYRARSFRRTLAPPVLPRLLARS*

>peptide 3 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 4 (31 aa)
MSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

Sequence

>CNT30221574
GGCTCCCAGCCAGAACCAATATTTCTCTGTTATATTCTGTTTTTTCTTTGTCAGCTAGCACAATTTGGATTTCGAGTCCAATGCGCTAACGCTTTCTTTA
GTTTTATTGCTCTTTCTCCGGGCTTTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATATATCGAGGTCGGAATGGGA
TCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTGGTGATTGATAAACAAGAAGGAAAATGGAAAAGTAGAAAATCTACATGTTTATAC
CGTTGAGGTCCTTAGTTTAGTGAAGTAGGCGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCA
CCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGATACACAGAAGTCATGGGTGATCATTGGTCCGAT
GCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGG
CACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATAT
TGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAA
AGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAACGCTTTTGAGCTTTCTTCAGAATT
TGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAG
CCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGC
ATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTT