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Detailed information on CNT30595506


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza meridionalisOryza sativa42.0914.7897.41463forward
CNT30678576Oryza meridionalisSetaria viridis27.6460.0897.04304forward
CNT30550263Oryza meridionalisIpomoea triloba31.45397.98346reverse complement
CNT30632593Oryza meridionalisVigna unguiculata31.3620.4498.55345reverse complement
CNT30635645Oryza meridionalisCapsicum annuum24.9144.2693.07274reverse complement
CNT30304298Oryza meridionalisTriticum aestivum31.3613.04100345forward
CNT30400948Oryza meridionalisTriticum turgidum31.3613.899.71345forward
CNT30569653Oryza meridionalisActinidia chinensis24.7340.5497.43272forward
CNT30585815Oryza meridionalisMusa acuminata3013.695.76330reverse complement
CNT30147394Oryza meridionalisMedicago truncatula31.3617.3297.68345reverse complement
CNT30440683Oryza meridionalisAegilops tauschii31.3635.71100345reverse complement
CNT30247816Oryza meridionalisAvena sativa31.3616.5299.42345reverse complement
CNT30662061Oryza meridionalisTriticum dicoccoides31.3617.98100345forward
CNT3081478Oryza meridionalisBrassica juncea30.5529.0295.54336reverse complement
CNT30263293Oryza meridionalisBrassica rapa10.8228.4789.08119forward
CNT30460491Oryza meridionalisSaccharum spontaneum4.4524.2693.8849reverse complement
CNT30143344Oryza meridionalisLolium perenne31.3615.42100345forward
CNT3017904Oryza meridionalisZea mays32.6421.8196.1359forward
CNT30229838Oryza meridionalisAnanas comosus9.8224.3899.07108forward
CNT30218527Oryza meridionalisKalanchoe fedtschenkoi21.4515.8598.73236forward
CNT3067373Oryza meridionalisLeersia perrieri14.7353.64100162reverse complement
CNT30655385Oryza meridionalisRosa chinensis31.3614.6598.55345reverse complement
CNT30203595Oryza meridionalisHelianthus annuus31.1818.7298.25343reverse complement
CNT30689128Oryza meridionalisTriticum urartu31.2718.5100344reverse complement
CNT30369805Oryza meridionalisOryza glumipatula31.3624.0698.84345reverse complement
CNT30420891Oryza meridionalisPapaver somniferum30.3612.4394.61334forward
CNT30104648Oryza meridionalisOryza rufipogon29.6455.9299.08326forward
CNT30575706Oryza meridionalisOryza barthii42.091994.38463reverse complement
CNT30582488Oryza meridionalisEchinochloa crusgalli31.3628.42100345reverse complement
CNT30495774Oryza meridionalisDigitaria exilis26.3673.23100290forward
CNT30116696Oryza meridionalisOryza nivara31.368.7100345forward
CNT30557289Oryza meridionalisPanicum hallii4.2720.4393.6247forward

Expression of CNT30595506

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQRR*

>peptide 2 (60 aa)
MYAFSNLFGTCCVCPRLSRLRIERFRRFRLGCTEHFSRSGFSGTEKSLILVSFHLHLLSF*

>peptide 3 (43 aa)
MAQDDSTYISRSEWDRVFSRLTVVPGFVVHMSRAGKVLRVVSN*

>peptide 4 (35 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSP

>peptide 5 (31 aa)
MSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

>peptide 6 (30 aa)
MSPLCRRNSCTPFRTSSGPVVSALDLAVLE*

Sequence

>CNT30595506
ACTCATCCTTCAGCTTTATTAGACCCCTCTCACTTGGTTGACAACCAATGAGCCCCTTATGTAGGAGGAACTCATGTACGCCTTTTCGAACCTCTTCGGG
ACCTGTTGTGTCTGCCCTCGACTTAGCCGTCTTAGAATAGAAAGGTTTCGCAGATTCAGATTAGGATGCACTGAACACTTTTCCAGATCTGGTTTTAGCG
GCACTGAAAAATCTTTGATTCTCGTCTCGTTTCACTTGCATTTGCTTTCGTTCTAAAGTGGAATCGAACCACTCACTCCGTTTGGATTTAGAGTCCAAAG
GGCCCANTCTTTGATTCTCGTCTCGTTTCACTTGCATTTGCTTTCGTTCTAAAGTGGAATCGAACCACTCACTCCGTTTGGATTTAGAGTCCAAAGGGCC
CAGGCCCAGCGAACGAAAAAGGATTTACAGTCCCACGCCCACTGCCCTGCCTTCACCTTTTGATTGCTTTATTTTTATACGATTTTTTGAGCAACTAGCG
CGAAAGCCGTTGCGCGTTAGCGCATTCGGAACCACACATTTTTATACGATTTTCGGATCATTTGATTTTCGTTTTGAAAACTTTCAAACCTTATCCACTA
AGGCTGGATGTTGGCTTCAAGAAATCTCCTTTAGCCTTACCCCGGGCTTTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCAC
ATATATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTT
GTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACG
CGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTC
GCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCT