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Detailed information on CNT30435015


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Aegilops tauschiiSetaria viridis30.3537.05100342forward
CNT30521002Aegilops tauschiiSetaria italica29.4673.6193.07332reverse complement
CNT30637323Aegilops tauschiiCapsicum annuum41.7933.3691.3471reverse complement
CNT3098505Aegilops tauschiiSolanum tuberosum42.7749.1394.81482forward
CNT30304298Aegilops tauschiiTriticum aestivum10042.5999.111127forward
CNT30221574Aegilops tauschiiHordeum vulgare39.5738.6599.33446forward
CNT30400948Aegilops tauschiiTriticum turgidum10045.0899.21127forward
CNT30147387Aegilops tauschiiMedicago truncatula39.8467.2298.22449forward
CNT30263293Aegilops tauschiiBrassica rapa14.6439.4787.27165forward
CNT30139202Aegilops tauschiiLolium perenne102.1345.0895.221151forward
CNT30721611Aegilops tauschiiTriticum spelta20.8550.9899.57235forward
CNT30366518Aegilops tauschiiSorghum bicolor27.6896.391.67312forward
CNT30360998Aegilops tauschiiLactuca sativa25.7310098.97290reverse complement
CNT30323793Aegilops tauschiiAsparagus officinalis18.3765.5197.58207reverse complement
CNT30151602Aegilops tauschiiBrachypodium distachyon32.8373.8594.59370forward
CNT30581589Aegilops tauschiiEchinochloa crusgalli77.6489.6596.57875forward
CNT3040451Aegilops tauschiiMarchantia polymorpha16.0630.8393.37181reverse complement

Expression of CNT30435015

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 2 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 3 (38 aa)
MGLGQDDFGSHVKVLRNSPAPNGEILAESTATCWHSIK*

>peptide 4 (45 aa)
MPSLPPPPTRRRRNQFQPNLHAHWYFDVTIGRSPWVLGKTTSVHT*

>peptide 5 (44 aa)
ALSPGFDHVSRTISVHMAQDDSTYISRSEWDRVFSRLTVVPGLS*

>peptide 6 (44 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGGNFSLGACLGNTKRGFRSL*

>peptide 7 (38 aa)
LFLRALTMSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

Sequence

>CNT30435015
GCTCTTTCTCCGGGCTTTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATATATCGAGGTCGGAATGGGATCGGGTGT
TTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTGGTGATTGATAAACAAGAAGGAAAATGGAAAAGTAGAAAATCTACATGTTTATACCGTTGAGG
TCCTTAGTTTAGTCAAGTAGGCGAGGGAATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTC
GAAGACCCCACCGTGGTATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGG
CGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCAT
GTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTG
TGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTC
TTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACGTTCCACACCATTTTCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTA
ACCAATTTCAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCATGGGTCTTGGGCAAGACGACTTCGGTTCACACGTGAAA
GTGCTTCGAAATTCTCCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGT
GGCAATTTCTCCTTAGGCGCATGTCTCGGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCC
ATGCAGCACCTGTATGAAAGTCAGTAC