Detailed information on CNT30210912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Helianthus annuusSetaria viridis16.0537.0598.25342reverse complement
CNT30378671Helianthus annuusArabidopsis thaliana7.0953.5597.35151reverse complement
CNT30637323Helianthus annuusCapsicum annuum49.8875.2888.711063forward
CNT3098505Helianthus annuusSolanum tuberosum31.8669.2291.9679reverse complement
CNT30440683Helianthus annuusAegilops tauschii36.8481.2697.2785forward
CNT30247816Helianthus annuusAvena sativa33.2233.8997.03708forward
CNT30263293Helianthus annuusBrassica rapa7.2737.0892.9155reverse complement
CNT30360998Helianthus annuusLactuca sativa13.6110099.31290forward

Expression of CNT30210912

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTRLEEEAPTNSVPAAAVRRGGGGKCSSE*

>peptide 2 (36 aa)
MHLRRKSLQPKSAEELSDVPALLIECQHVAMLSVRR*

>peptide 3 (43 aa)
MMLSWSFRMISHTGTETRPNSRGGQQWGILDNGRKPDPAISRE*

>peptide 4 (47 aa)
MTSSPHGLYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 5 (50 aa)
MWFNSIQRAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVSSCREMFGQVL*

>peptide 6 (63 aa)
MLSKPIHLSETEESGISCVGVKSENIRRTAKSKGSSLGPYRRWGAKAWGANRISYPGSRCRKR*

>peptide 7 (72 aa)
MKLESLVIVDQHAAVNMYPGPVHTAHHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVKS*

Sequence

>CNT30210912
TCAGCAAGGTGTCTATTCTAAGGCTTAGGAGAATGAAGCAGCCCCGACTGTGAGTGAAGGCTGAAGAGCTGTTTGATGAGCCTGCGTTTGATGGCCGGTC
TCGTCGGGCCAAATCCTAAAGAAAGCTAAAAAGAGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGC
TTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGCCCGAACTCCCGCGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCC
CGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCCCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCCCGAC
TAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAA
AGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCTTGTGTAGGGGTGAAATCCGAAAA
TATACGAAGGACCGCCAAAAGCAAAGGCAGCTCTCTGGGTCCCTACCGACGATGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGCTACCCTGGTAGT
CGATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGA
AACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGA
AAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTGTCGTTAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCG
AAACCCTCGTTTTGTGTTGCTGAGACATGCACCTAAGGAGAAAGTCTTTGCAGCCGAAGTCAGCCGAGGAGCTGAGTGACGTGCCAGCGCTACTAATTGA
GTGCCAGCATGTAGCTATGCTGTCAGTAAGAAGGTAGCCGGTGCCTTTCAAAGCCTAAGCCCTTTCTTTTCTAGCGTGCGCTTTAGTTTGATTGCAGCTA
GCGCGCTTGACTAAGAAGATAGAAAGGGTTTTTCTCGCTTGGTTAGTAAAGTCAAGTTTTTGGCCTTATCGATCTTGCAGGTGACGACGACGTCGAGTTG
ACGGCAGAGAAAGACTGGGCATTCAGGCGAGCCGCCCGGTGGTGTGGTACGTAGTGGGTTTAGTATGCCCCGCCAAAACGGCTCCGAAACAAACAAAAAG
GTGCGTGCCGCACTCACGAAGGACTGCCAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCTTTATGGGCTGGGCCACACACGTGC
TACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT
TGGAATCGCTAGTAATCGTGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCATCACACCCTGGGAATAGGTTTCGCCCGAAG
CATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCGACTGGG
GTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCCTTCGCGATGGAAATTCCCTTCAAGGTGCTTGCTTCCACTGGTAGCGGGC
GGGCGAAGGGTCCAAAGGACACGTAGCCGGGGGCCAGTCAGAAAATCCAAGAATTCCATTTTCCTTCTTGTTCATCAATCGGAAATCAAGACAAACCGGG
CACTACGGTGAGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGGAATCGTCTTGCGCCATATGTACTGAGATTGTTCGGGAGACATGGTCCA
AGCCCGGTACGAGGATGACTTGTGCCTAGGG