« Back to Oryza barthii search


Detailed information on CNT30575706


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002290, E-value = 4e-109

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza barthiiOryza sativa91.5171.1896.462230reverse complement
CNT30670953Oryza barthiiSetaria viridis14.0337.0597.95342reverse complement
CNT30548882Oryza barthiiIpomoea triloba39.3536.3896.35959forward
CNT30632593Oryza barthiiVigna unguiculata39.3956.8795.62960forward
CNT30637323Oryza barthiiCapsicum annuum19.233.1489.53468forward
CNT3098505Oryza barthiiSolanum tuberosum18.7146.4893.86456reverse complement
CNT30304298Oryza barthiiTriticum aestivum39.4336.3297.09961reverse complement
CNT30400948Oryza barthiiTriticum turgidum39.4338.4497.09961reverse complement
CNT30569653Oryza barthiiActinidia chinensis12.9747.0994.62316reverse complement
CNT30585815Oryza barthiiMusa acuminata39.3539.5194.06959forward
CNT30234810Oryza barthiiBrassica oleracea21.5869.4892.97526reverse complement
CNT30147394Oryza barthiiMedicago truncatula39.3148.0996.24958forward
CNT30440683Oryza barthiiAegilops tauschii32.2981.4797.46787forward
CNT30247816Oryza barthiiAvena sativa28.8533.6598.15703forward
CNT30662061Oryza barthiiTriticum dicoccoides39.4350.0897.29961reverse complement
CNT3081478Oryza barthiiBrassica juncea30.4964.1693743forward
CNT30263293Oryza barthiiBrassica rapa6.4837.885.44158reverse complement
CNT30143344Oryza barthiiLolium perenne39.4342.9697.5961reverse complement
CNT3016633Oryza barthiiZea mays39.9350.9295.99973reverse complement
CNT30229838Oryza barthiiAnanas comosus18.1810097.07443reverse complement
CNT30218527Oryza barthiiKalanchoe fedtschenkoi29.1847.7597.47711reverse complement
CNT3067373Oryza barthiiLeersia perrieri11.4992.7297.86280forward
CNT30655299Oryza barthiiRosa chinensis39.3933.8396.35960forward
CNT30203595Oryza barthiiHelianthus annuus39.852.9594.95970forward
CNT30689128Oryza barthiiTriticum urartu39.4351.6996.46961forward
CNT30721611Oryza barthiiTriticum spelta9.1948.5998.66224reverse complement
CNT30595506Oryza barthiiOryza meridionalis1942.0994.38463reverse complement
CNT30360998Oryza barthiiLactuca sativa11.5797.2497.16282forward
CNT30369805Oryza barthiiOryza glumipatula58.7699.8697.351432forward
CNT30420891Oryza barthiiPapaver somniferum24.0921.8590.97587reverse complement
CNT30323793Oryza barthiiAsparagus officinalis8.2163.2997200forward
CNT30151602Oryza barthiiBrachypodium distachyon8.7442.5199.53213reverse complement
CNT30104648Oryza barthiiOryza rufipogon23.96100.1796.58584reverse complement
CNT30582488Oryza barthiiEchinochloa crusgalli39.357997.5959forward
CNT30495774Oryza barthiiDigitaria exilis16.1399.2496.95393reverse complement
CNT3040451Oryza barthiiMarchantia polymorpha7.4330.8392.27181forward

Expression of CNT30575706

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MNCHRILRGLIQDLKYELNIGFCLSIISQLTLKKKRERDCH

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPRLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (40 aa)
MTRLEEEAPANSVPAAAVRQGGQVFFGMTSRKGHVGGESG*

>peptide 4 (72 aa)
MKLKSLVIADQHAAVNMYPGPVHTACHTLGIGFARIIGPMITHDFCVPLVPQRPLVVLLAHTKVGSSTGVKS*

>peptide 5 (47 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 6 (62 aa)
MLSKPIHLSEIEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCHK*

Sequence

>CNT30575706
GCGTGGGAATCTGCTGAACAGTTTGGGCCAAATCCTGAAGAAAGCTCAAAAGCGTTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCGGGTAAAGG
CTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCCACGGGGGGCAGCAGTGGGGAATC
TTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGA
CTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTCGGAATGACTAGTCGTAAAGGGCACGTAGGCG
GTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGATAGAGGAGAGTGGAATTTCGTGTGTAGG
GGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATT
AGATACCCTGGTAGTCCATGCCATAAATGATGAGTGTTCGCCCTTGGTCTACGCAGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTA
CGGTCGCAAGACCAAAACTCAAAGGAATTGATGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACTTGCAAAACCTTACCAGCCCTTG
ACATATGAACAACAAAACCTGTCTTTAATGGGATGGTACTGACTTTCATACAGGTGCTGCATTGCTGTCGTCAGCTCGTGTCGTGAGATGTTTAGTCAAG
TCCTATAACGAGCGAAACCCTCATTTTGTGTTGCTGAGACATGCGGCTAAGGAGAAATTGTGGTACGTAGTGGTAATAGTACGCGCCCCGCTCCAAAACA
AAGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTAGGCCA
CACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGA
ACATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCTGTCACACCCTGGGAATTGGTTT
CGCCCGAATCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCAAGGTGGGGTCT
TCGACTGGGGTGAAATCGTAACAAGGTACGTAGGGGAACCTGTGGCTGGATTGAATCCTCGCCTACTTGACTAAACTAAGGACCTCAACGGAAGCTTATG
TATATTTTCTACTTTTCCATTTTCCTTCTTGTTTATCAATCACCAATCAAGACAAACCGGGCACTATGGTGAGATGTGAAAACACCTGATCCCATTCTGA
CCTCGATATATATGTGGAATCGTCTTGCACCATATGTACTGAAATTGTTCGGGAGACATGGTCAAAGCCCGGGGTAAGGCTAAAGGAGATTTCTTGAAGC
CAACATCCAGCCTTAGTGGCCCCTCTCTGATAAGGTTTTAAAGTTTTCAAAACGAAAATCAAATGATCCGAAAATTGTATAAAAATGTGTGGTTCCGAAT
GCGCTAACGCACAACGGCTTTCGCGCTAGTTGCCCAAAAAATCGTATAAAAATAAAGCAATCAAAAGGTGAAGGTAGGGCAGTGGGTATGGGACTGTAAA
TCCTTTTCCGTTCACTGGGCCTGGGCCCTTTGGACTCTAAATCCAAACGGAGTGAGTGGTTTGATTCCACTTTAGAACGAAAGCAAATGCAAGTGAAATG
AGACGAGAATCAAAGATTTTTCAGTGCACTTGTCCCACTAAAACCAAATCTGGAAAAGTGTTCAGTGCATTCTAATTTGAATCTGCGAAACCTTTCTATT
CTAAGACGGCTAAGTCGAGGGCAGACACAACAGGTCCCGAAGAGGTTCGAAAAGGCGTACATGAGTTCCTCCTACATAAGGGGCTCATTGGTTGTCAACC
AAGTGAGAGGGGTCTAATAAAGCTGAAGGATGAGTATAGATACCTTCAGTCAATATCGCTTGGGAGGCATAACCGCCTCTACCAGGAGATTCTCTCTTAT
TTCTTAAGAAAGTATGAATTGCCATAGAATTCTTAGAGGCCTGATTCAAGATCTGAAGTATGAATTGAACATTGGTTTTTGCCTGTCAATAATATCGCAG
TTGACCCTTAAAAAGAAGAGAGAGAGAGACTGCCATC