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Detailed information on CNT30400948


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Triticum turgidumOryza sativa47.8438.1799.331196forward
CNT30670953Triticum turgidumSetaria viridis13.6837.05100342forward
CNT30524653Triticum turgidumSetaria italica20.9643.7499.81524reverse complement
CNT30548882Triticum turgidumIpomoea triloba39.6837.6398.49992reverse complement
CNT30632593Triticum turgidumVigna unguiculata39.9259.1297.49998reverse complement
CNT30158473Triticum turgidumPistacia vera2.4427.9810061reverse complement
CNT30637323Triticum turgidumCapsicum annuum18.9233.591.12473reverse complement
CNT3098505Triticum turgidumSolanum tuberosum19.3649.3494.63484forward
CNT30304298Triticum turgidumTriticum aestivum96.9691.6199.422424forward
CNT30221494Triticum turgidumHordeum vulgare31.1662.7299.49779reverse complement
CNT30569653Triticum turgidumActinidia chinensis12.6447.0996.52316forward
CNT30585815Triticum turgidumMusa acuminata40.1241.3395.711003reverse complement
CNT30234810Triticum turgidumBrassica oleracea22.5674.593.97564forward
CNT30147394Triticum turgidumMedicago truncatula39.845098.09996reverse complement
CNT30435015Triticum turgidumAegilops tauschii45.0810099.21127forward
CNT30248040Triticum turgidumAvena sativa31.257.9598.85780forward
CNT30662061Triticum turgidumTriticum dicoccoides76.7610099.581919forward
CNT3081478Triticum turgidumBrassica juncea29.7264.1694.62743reverse complement
CNT30263293Triticum turgidumBrassica rapa6.639.4786.67165forward
CNT30139202Triticum turgidumLolium perenne87.9686.1397.232199forward
CNT3016633Triticum turgidumZea mays76.1299.5896.481903forward
CNT30229838Triticum turgidumAnanas comosus17.7210098.19443forward
CNT30218527Triticum turgidumKalanchoe fedtschenkoi29.9650.398.93749forward
CNT3067373Triticum turgidumLeersia perrieri11.292.7299.29280reverse complement
CNT30655299Triticum turgidumRosa chinensis39.6434.9298.49991reverse complement
CNT30203595Triticum turgidumHelianthus annuus40.1254.7596.611003reverse complement
CNT30689128Triticum turgidumTriticum urartu60.2481.01991506reverse complement
CNT30721611Triticum turgidumTriticum spelta9.5651.8499.58239forward
CNT30366518Triticum turgidumSorghum bicolor12.4896.393.27312forward
CNT30595506Triticum turgidumOryza meridionalis13.831.3699.71345forward
CNT30360998Triticum turgidumLactuca sativa11.610098.97290reverse complement
CNT30369805Triticum turgidumOryza glumipatula38.5667.2297.1964reverse complement
CNT30154718Triticum turgidumPrunus persica18.9668.493.46474reverse complement
CNT30420891Triticum turgidumPapaver somniferum23.621.9792.2590forward
CNT30151602Triticum turgidumBrachypodium distachyon14.873.8594.59370forward
CNT30104648Triticum turgidumOryza rufipogon18.7280.2798.5468forward
CNT30575706Triticum turgidumOryza barthii38.4439.4397.09961reverse complement
CNT30582488Triticum turgidumEchinochloa crusgalli47.7698.3599.661194reverse complement
CNT30116696Triticum turgidumOryza nivara47.8430.1699.411196forward

Expression of CNT30400948

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 2 (37 aa)
MIRRGQDSNLQSSGHEPDELTNSSTPLLPLIFLSLFP*

>peptide 3 (31 aa)
MSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

>peptide 4 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 5 (45 aa)
MPSLPPPPTRRRRNQFQPNLHAHWYFDVTIGRSPWVLGKTTSVHT*

>peptide 6 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSSLLPPVGVRAVSQSQCG*

>peptide 7 (44 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGGNFSLGACLSNTKRGFRSL*

>peptide 8 (72 aa)
LCYILFFLCQLAQFGFRVQCANAFFSFLALSPGFDHVSRTISVHMAQDDSTYISRSEWDRVFSRLTVVPGLS*

>peptide 9 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 10 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLIMFAPHAFAPQRR*

Sequence

>CNT30400948
CTCTGTTATATTCTGTTTTTTCTTTGTCAGCTAGCACAATTTGGATTTCGAGTCCAATGCGCTAACGCTTTCTTTAGTTTTCTTGCTCTTTCTCCGGGCT
TTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGT
AGTGCCCGGTTTATCTTGATTGGTGATTGATAAACAAGAAGGAAAATGGAAAAGTAGAAAATCTACATGTTTATACCGTTGAGGTCCTTAGTTTAGTCAA
GTAGGCGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGG
TATGCGCCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAG
GGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGA
GAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGACCCAGCCCATA
AGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGG
GCGCGTACTATTACCACTACGTTCCACACCATTTTCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAATTTCAACCAAA
CCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCAC
CGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGTGGCAATTTCTCCTTAG
GCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACAACACGAGCTGACGACAGCCATGCAGCACCTGTATG
AAAGTCAGTACCATCCTGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCG
CTTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGA
CCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCATGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAG
AGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGA
GAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGT
CTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTT
CTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTG
TGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTT
GAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGG
AGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAA
AACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTTTGACTATGATTAGGCGGGGACAGGATTCG
AACCTGCAGTCTTCAGGTCATGAGCCTGATGAGTTGACCAATTCCTCTACCCCGCTTCTTCCCCTGATCTTTCTTTCCCTCTTCCCATAAACATTGATTC
TCTCTCCTAACCACTCTTAAATATGTGAAATACACGGAATCGATCCAAAACTACAAGCAAGGGAATCAACTCTTATTGCCGTAAAGGAAAAATAACCCCT