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Detailed information on CNT3098505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Solanum tuberosumOryza sativa47.7114.9495.09468forward
CNT30670953Solanum tuberosumSetaria viridis34.8637.0595.91342forward
CNT30550263Solanum tuberosumIpomoea triloba69.325.8993.53680reverse complement
CNT30158473Solanum tuberosumPistacia vera6.8330.7394.0367reverse complement
CNT30637323Solanum tuberosumCapsicum annuum96.1366.7890.14943reverse complement
CNT30304298Solanum tuberosumTriticum aestivum47.7117.6994.44468forward
CNT30221574Solanum tuberosumHordeum vulgare22.1218.895.39217forward
CNT30400948Solanum tuberosumTriticum turgidum47.7118.7294.87468forward
CNT30585815Solanum tuberosumMusa acuminata45.5718.4292.39447reverse complement
CNT30147387Solanum tuberosumMedicago truncatula61.0689.6793.32599forward
CNT30435015Solanum tuberosumAegilops tauschii47.541.3595.06466forward
CNT30249262Solanum tuberosumAvena sativa22.127.9189.86217forward
CNT30662061Solanum tuberosumTriticum dicoccoides43.6322.395.56428forward
CNT30314095Solanum tuberosumCamelina sativa45.7729.9386.64449forward
CNT3081478Solanum tuberosumBrassica juncea32.8227.8194.72322reverse complement
CNT30263293Solanum tuberosumBrassica rapa17.2340.4388.76169forward
CNT30139202Solanum tuberosumLolium perenne47.7118.3394.87468forward
CNT3018235Solanum tuberosumZea mays38.9419.7394.76382reverse complement
CNT30655385Solanum tuberosumRosa chinensis46.2819.2895.81454reverse complement
CNT30210912Solanum tuberosumHelianthus annuus69.2231.8691.9679reverse complement
CNT30687939Solanum tuberosumTriticum urartu13.6634.194.78134reverse complement
CNT30360998Solanum tuberosumLactuca sativa29.5610095.17290reverse complement
CNT30369805Solanum tuberosumOryza glumipatula42.8129.2994.29420reverse complement
CNT30420891Solanum tuberosumPapaver somniferum32.9312.0394.12323forward
CNT30323793Solanum tuberosumAsparagus officinalis15.648.4294.77153reverse complement
CNT30151602Solanum tuberosumBrachypodium distachyon16.2131.7494.34159forward
CNT30575706Solanum tuberosumOryza barthii45.9718.5193.79451reverse complement
CNT30581589Solanum tuberosumEchinochloa crusgalli43.6343.8595.33428forward
CNT30116696Solanum tuberosumOryza nivara43.7310.8295.34429forward
CNT3040451Solanum tuberosumMarchantia polymorpha18.4530.8393.92181reverse complement

Expression of CNT3098505

Peptides detected in this lncRNA

>peptide 1 (56 aa)
QDFDIIIFFYFIFSPGLDHVSRTISVHMAQDDSTYRGRNGIGCFHVLPKCLVCLDF*

>peptide 2 (39 aa)
MNKKENGTIGFWTRPRLRVLWTLRSPATSGSKLAPMLES*

>peptide 3 (40 aa)
MSPEQSQYIWRKTIPHIEVGMGSGVFTSYRSAWFVLIFDS*

>peptide 4 (37 aa)
MGDHWSDASVKTNSQGVTGGVYRAWVHIHRGMLIRDY*

>peptide 5 (38 aa)
MGVLNPLRTTPPGGSPESRVFLCCQLDVFVTYKIRPKT*

Sequence

>CNT3098505
GCAAGATTTTGACATCATAATCTTTTTTTATTTCATTTTTTCACCGGGCTTGGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCC
ACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTTACCGAAGTGCCTGGTTTGTCTTGATTTTTGATTCATGAACAAGAAGGAAAATGGAACAA
TTGGATTTTGGACTCGCCCCCGGCTACGTGTCCTTTGGACCCTTCGCTCGCCCGCCACCAGTGGAAGCAAGCTAGCCCCTATGTTGGAAAGTTAGGGGAA
GAGTGCATTTCCATCAAGAAAGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCATCCCAGTCGAAGACCCCACTGTGGTATGCG
CCAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGTGCCACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGTCAAAACCAATTCCCAGGGTGTG
ACGGGCGGTGTGTACAGGGCCTGGGTACATATTCACCGCGGCATGCTAATCCGCGATTACTAGCGATTCCAACTTCATGTTCCTGAGTTGCAGAGAACAA
TCCGAACTGAGGAAATCTTTCTGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGACCAGCCCATAAGGGCC
ATGCGGACTTGACGTCATCCCTACCTTCCTCCAATATATCACTGGTAGTCCTTCGTGAGTGCGGCACGCACCTTTTTTTTTATTTCGGTGCCGTTTGTTT
GGGATGGGTGTACTAAACCCACTACGTACCACACCACCGGGTGGCTCGCCTGAATCCCGAGTCTTTCTCTGTTGTCAACTCGACGTCTTCGTCACCTATA
AGATAAGGCCAAAAACTTGACTTTACTAAACAAGCAAGAAAGGCTCTTTCTATCTTATTAGTCAAGCGCGCTAGCTGCAAT