Detailed information on CNT3039297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30263293Cucumis meloBrassica rapa3.5222.2591.493reverse complement

Expression of CNT3039297

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSTTHFHKGNLPYRKRVSTPIPSPIRPIPPRALAAEPLLLLRALVHSGS*

>peptide 2 (56 aa)
MRPRNSQVFKDELISENLLKTFILLLHSCLFSRTDSISSSQSSDRQLAPTLIHSSR*

>peptide 3 (50 aa)
MRESKPSPFSRALVHRSFFEPHFFLLLHSSPKAGTSDRRENTRSHSDLDM*

>peptide 4 (47 aa)
LKASDPNSWTKACCLLPPSPNTHTDSCTRTGEYSESELLLLSVSKME*

>peptide 5 (68 aa)
MLGLKCCWIGCSLLPYSRNFRLGCLSSWAAVFSLPGRPRSGRRAAERGPSSLLYSAGSKTRRRSETKD*

>peptide 6 (30 aa)
MRRAKSIKIQGRYAWVSIARQRPEAESLDR*

>peptide 7 (33 aa)
MKENLTYLRGAQYGLESSDEPIIISKKLLFLTN*

Sequence

>CNT3039297
TCTGAAAGCTTCGGATCCTAATTCATGGACAAAGGCCTGCTGCCTTCTACCTCCGTCTCCCAATACTCACACTGATTCTTGCACGCGCACGGGCGAATAT
TCTGAAAGCGAGCTACTCTTGCTTTCGGTATCAAAAATGGAATAAGAAAAGAGGATCGAGGTGGACTCCTTGGAATCCTTATTAGTGCGAATTCAGGTTT
GACCCTTTTTCTCTTTTATCAAGAGAAGGTTCATATGAGAAGGGCGAGATCTCGAGATCTAAGAGAAAGAGAAGAAGAAAAGGCTGAATGGGATGATCTT
TCATGAAAGAAAACTTGACATATCTCCGCGGAGCGCAATACGGGCTTGAATCTTCTGATGAACCAATAATTATTTCGAAAAAATTGCTTTTCTTGACTAA
TTAAACTACCACGGACCGGAGCCATTACTTATATATATTTGCTTTCTGATATCTGATTATTAGCGGGAGAGAGAATGAGAAGAGCCAAGTCAATCAAAAT
CCAGGGAAGGTATGCATGGGTTAGCATAGCGAGACAGAGGCCCGAGGCAGAAAGTCTCGACCGATGAGTACCACCCACTTCCACAAAGGTAATTTACCGT
ACAGAAAGAGGGTGTCCACCCCTATTCCATCTCCCATTCGCCCAATCCCCCCTCGAGCCCTTGCCGCTGAGCCTTTGCTTTTATTGAGGGCCCTTGTTCA
TTCAGGCTCCTAATCAAGGGATAAGGACTGAGCTTGAAAGTCCTAACCTTTGTATCCTTCCTAACCTCAGTCTCAATCAACTCCTAAGCGCTCCTCTCCT
TATCAGTCTCAAATTCTTTGATCCTCTCCTATATCTGAAACTACGAGTACCTTCGAACCGCCCCGCGTAGTCTCTTTCTTGAGTCGAGTTATTTGAAAAC
CTTCGGATCCAGCCTCCGGCTTCTTATTGCAGCGGACCACTAAAAGCCTTCTTCATTGACTTTCAGTTTCAGAAGTGGAGAATGAAACTACCACGGACCG
GTGCAATGTAATTGAGCTAAACTAATAAAGCAAAGCGAGAGGTGAGATTCCATTTCGTCTTCAGAGTTCAGGCTGAATTCATATTCGTCGACTTCGTAGA
AGGAGAAAAGGGGAAGAATTTCTCAGACTGGAAAGGATAGGGCTGAATTCAGAGAAAGAGCCGCTATGAGCAAGACCGATTTACCGATCTTCATGTCTTA
ATTAAGTAAATGACAACGGACACTTTTCTTCTTTTCAAACTTCTTTCTATTCCGAGACCCCTCTTTAATCAGAGTGATTTGCTTTTTTCATAGTGAAAAT
CGAGTGAATTTTGCTTTTCTCGTTCATGAGAGAATCAAAGCCCTCTCCTTTCAGTCGAGCCCTTGTTCATCGATCATTCTTTGAGCCTCACTTCTTCCTT
CTTCTTCATTCATCTCCCAAAGCGGGCACTAGCGATCGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGAAATCGTCTTGCGCCATATGTAC
TGAGATTGTTCGGGAGACATGGTCCAAGCCCGCTGAATAAAGAAAGGAGAGACCAGACCGCCTATTCATTCCTCTGATTTTCTCCTGAATTACTAGCTAA
GAGATGCTTGGATTGAAATGCTGCTGGATAGGCTGTTCGCTATTACCTTACTCAAGAAATTTCCGACTTGGATGCCTTAGTTCTTGGGCAGCAGTCTTCT
CACTTCCAGGAAGACCTAGATCTGGGAGGAGAGCGGCAGAAAGAGGTCCTTCTTCCCTTCTCTACAGTGCAGGTTCTAAGACTAGGCGAAGATCGGAGAC
TAAAGACTGATCATCAATTCCTTTGACCTTTCGTCCGAACATTCTTTGAGAAATGCTAACCAGGAAAAATGAGGCCGAGAAATAGCCAAGTTTTCAAGGA
TGAGTTGATCTCAGAGAATTTGCTTAAGACATTCATTCTCCTTCTTCATTCATGTCTTTTCTCTAGGACCGATTCGATTTCCTCCTCTCAATCTTCTGAT
CGGCAACTAGCCCCTACTCTGATTCATTCTTCTCGATGAGCCGAAACTGAGCCTTTTTATTGAGGGATTTGACCCTCTATGATTGCACGCTCCATCCTTC
TACTAAGAGGACATTATCAATTCAGTTCTCAGGGCAAGAGATGGCGCTGAAACGGGAGGATAGAAGAAGAAAATCTACTGAAAGAGCTGACTCTGGCGAC
TGAGTCTTCTTCAAGGGAAAGGTGGGGTTCGCTTCCTCTTGGGCTTCGTTCCGTCGATTAGCTTCCCTCTTCCCTATTCAAGAGCCTAACTCCTCTTCCC
CTTCCTTTCCCTTCCGCGATCGTGCTGGTGGGTAGTGTACCTGGATCCGGCCCACGTAGCGGTTGAAGCTTCTGAATTTGTCTATTATTTCATCCACTGA
TTTCATACCATATTTCTCATAATTGCTTATAAAGAAGCTAGTTCCAAAGTCTGTCAACAACAAAAAGAAGAACTACAACTTATTAAAGAGAAAGAAGAAA
AGCAAGAGCCACAGCTCTCTCCTTTCAGTCGAGACCTCTCCCTCCGTCACTCAGTCTCACCTATCTCCTCTTCCTACGCCCAAACAACTTTTCCCTCTCC
TTATTTAGTAGGTCAACTTGCACGACTTTACATAAGCTACGCC