Detailed information on CNT30139202


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670953Lolium perenneSetaria viridis13.437.0599.71342forward
CNT3098505Lolium perenneSolanum tuberosum18.9649.3494.63484forward
CNT30304298Lolium perenneTriticum aestivum83.5180.5797.142132forward
CNT30400948Lolium perenneTriticum turgidum85.6687.4897.262187forward
CNT30435015Lolium perenneAegilops tauschii45.08102.1395.221151forward
CNT30263293Lolium perenneBrassica rapa6.4639.4787.27165forward
CNT30360998Lolium perenneLactuca sativa11.3610098.62290reverse complement

Expression of CNT30139202

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 2 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 3 (32 aa)
MSLAPAPVPRSSYWRHGHGFHSFISFFVLLWN*

>peptide 4 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 5 (37 aa)
MQNELSASTGSSIFLLEAWSWLSFIHFILCSVVELNH*

>peptide 6 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 7 (50 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAHFGGNFSLGACLSNTKRGFRSL*

>peptide 8 (58 aa)
EGLWATIPRVSQKVLAMLYLLMKQKDMIHRLKITVPMLPLVYQLQVNPVKPRTLGNAK*

>peptide 9 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQRR*

>peptide 10 (31 aa)
MSPEQFQYIWRKTIPHIYRGRNGIGCFHVSP*

>peptide 11 (66 aa)
MVMAFIHSFHSLFCCGIEPLAQIGFRVQGAQKDLESFYQPVRTNIDLLDSFFSLSASTIWIDSPMR*

>peptide 12 (29 aa)
GRPVGYDPPSESEGFSYALSPDETERYDP*

Sequence

>CNT30139202
CGGAAGGCCTGTGGGCTACGATCCCCCGAGTGAGTCAGAAGGTTTTAGCTATGCTCTATCTCCTGATGAAACAGAAAGATATGATCCATAGGTTAAAGAT
AACGGTGCCGATGCTGCCCCTGGTTTATCAGTTGCAGGTGAATCCTGTGAAACCGAGGACACTTGGAAATGCAAAATGAGCTTAGCGCCAGCACCGGTTC
CTCGATCTTCCTACTGGAGGCATGGTCATGGCTTTCATTCATTCATTTCATTCTTTGTTCTGTTGTGGAATTGAACCACTAGCACAAATTGGATTTCGAG
TCCAGGGCGCTCAAAAGGATTTAGAGTCCTTTTACCAACCAGTCAGAACCAATATTGATCTTTTAGATTCTTTTTTTTCTTTGTCAGCTAGCACAATTTG
GATTGATAGTCCAATGCGCTAACGCTTTCTTTAGTTTTCTTGCTCTTTCTCCGGGCTTTGACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGA
CGATTCCACATATATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTTGATTGGTGATTGATAAACAAGAAGGA
AAATGGAAAAGTAGAAAATCTACATAAGCTTCCGTTGAGGTCCTTAGTTTAGTCAAGTAGGCGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACA
GGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTATGCGCCAATAAGATCACCAAAGGCCTTTGTGGCACTAGTGGT
ACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCG
CGGCATGCTGATCCGCGATTACTAGCGATTTCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTT
ACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATC
TCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTATTACCACTACGTACCACACCACCGGGCGGCTGGC
CTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAAGCCTAACCAAACCTCCATGCGGTACTTTGACGTCACTATAGGTAGGTCTTG
AGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCAC
TCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTT
CGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGGACAGGTTT
TGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGTT
TCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGG
ACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGA
TCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACT
TTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGG
GGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTT
TCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCAT
CATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTC
GGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCATAGCGCGCGCCC
TGTAGTTTTGAAGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCC