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Detailed information on CNT3022241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LWR2|TIP43_ORYSJ, E-value = 7e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Populus trichocarpaSetaria viridis13.7721.2482.84134forward
CNT30521388Populus trichocarpaSetaria italica13.7721.282.84134forward
CNT30317642Populus trichocarpaCorylus avellana8.2233.3388.7580forward
CNT30374836Populus trichocarpaArabidopsis thaliana17.6820.581.98172forward
CNT30727261Populus trichocarpaCorchorus capsularis17.9931.4289.14175forward
CNT30382149Populus trichocarpaManihot esculenta7.324.9187.3271forward
CNT30628730Populus trichocarpaVigna unguiculata22.6149.3383.64220forward
CNT30396950Populus trichocarpaTriticum turgidum5.7623.9387.556forward
CNT30589165Populus trichocarpaMusa acuminata16.5535.1581.37161forward
CNT30554109Populus trichocarpaOryza glaberrima11.9223.3483.62116forward
CNT30147201Populus trichocarpaMedicago truncatula27.6556.2883.27269forward
CNT30443231Populus trichocarpaAegilops tauschii1124.9485.05107forward
CNT30256642Populus trichocarpaAvena sativa13.2625.0582.95129forward
CNT30627409Populus trichocarpaDaucus carota17.0626.4383.13166forward
CNT30352266Populus trichocarpaEragrostis tef11.9221.8983.62116forward
CNT30477520Populus trichocarpaArabidopsis halleri9.7625.4786.3295forward
CNT30358120Populus trichocarpaLactuca sativa21.9920.6281.78214forward
CNT30704199Populus trichocarpaPrunus avium20.7613.6287.13202forward
CNT30644098Populus trichocarpaCannabis sativa11.6140.3684.07113forward
CNT30576737Populus trichocarpaOryza barthii11.9226.6783.62116forward
CNT30117062Populus trichocarpaOryza nivara6.0625.6588.1459forward
CNT3051018Populus trichocarpaCucumis sativus6.0621.9388.1459forward

Expression of CNT3022241

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MPVRMVIWPPRAKPKVTAGLTWPPEMLAPTETATKRANPWQTAMATSPAGSRAASPVSLSARVINILIVSI*

>peptide 2 (56 aa)
KDKCGQVKLLEVSGQRSMISDEHVSIDKSSNPTTNKRPSPVDPVVMEITTSHSWAK*

>peptide 3 (38 aa)
MDPPENGPAAKMLAPTMKPMAMGAMVPRDPFLGSAAVA*

>peptide 4 (36 aa)
MIMRYMFLCCGSIIYISMLREAKGKAMAVRKDRGCGK

Sequence

>CNT3022241
CAAAGACAAATGTGGCCAAGTGAAGTTATTAGAAGTCTCCGGACAAAGGAGTATGATCAGTGATGAACACGTTTCCATAGATAAGTCCAGCAATCCCACC
ACCAACAAGAGGCCCAGCCCAGTAGATCCAGTTGTCATGGAAATCACCACTAGCCACAGCTGGGCCAAATGATCGGGCTGGGTTCATGGATCCACCAGAG
AATGGGCCTGCAGCCAAGATGTTGGCACCCACAATGAAACCGATGGCTATGGGAGCTATGGTGCCGAGGGATCCCTTCTTGGGGTCAGCAGCAGTTGCAT
AGACAGTGTAAACCAAGGCAAATGTGATGATGATCTCCATGACGACTCCTTCAATGGCTCCTACTCCAGCTGCAACACTGTGGATGGGGACTGCCTGTTG
AAACCAGTGGCAACTTTGAGAAGGTAGCATGCAACAATGGAGCCCAGGAGCTGGGCAATCCAGTAGAAGATGCCAGTGAGGATGGTGATTTGGCCACCAA
GAGCCAAGCCAAAAGTGACAGCAGGGTTAACATGGCCACCGGAGATGTTGGCACCTACAGAAACTGCAACGAAGAGAGCAAATCCATGGCAAACCGCAAT
GGCTACTAGCCCAGCAGGATCAAGAGCTGCATCACCTGTCAGCTTATCTGCAAGAGTAATTAACATCCTTATAGTTAGTATTTGATTACTGTTATAACTT
ACAGGCAGCACTGCGTTATCAATATTCCTTGCGTGGCTATATATTGACATATATCATGATGCCTGTTAATGCTAGCTAGCACTATATATTTAATCAAGAG
GATATTCTTCAAGCTCAAGTAACATAAGCTACTGAATCTAGAACTCAAGCTTTTACAAGTTATGATCATGAGATATATGTTTTTGTGCTGTGGTTCGATA
ATATATATATCCATGCTAAGAGAAGCAAAAGGGAAAGCTATGGCTGTGAGGAAGGATCGAGGGTGTGGAAAAG