CANTATAdb - search

Detailed information on CNT30543529

BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 5e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30712559	Brassica napus	Glycine max	12.5	20.8	84.87	119	forward
CNT30256642	Brassica napus	Avena sativa	11.34	20.97	83.33	108	forward
CNT3074222	Brassica napus	Brassica juncea	48.63	44.82	99.78	463	forward
CNT30260230	Brassica napus	Brassica rapa	18.7	62.46	99.44	178	forward
CNT30612709	Brassica napus	Arabis alpina	39.6	35.43	82.23	377	forward
CNT30619934	Brassica napus	Cajanus cajan	12.5	23.15	83.19	119	forward
CNT30596416	Brassica napus	Oryza meridionalis	11.34	23.79	81.48	108	forward

Expression of CNT30543529

Peptides detected in this lncRNA

>peptide 1 (31 aa)
HNSHSSKKPSRKITTPTTNPNTTYINGQGFI*

>peptide 2 (61 aa)
IIHIRLKSLQGKLQLQQQTQIQHTSTDKDSSKKKIQRPHRNSITMRNKNKSYYNSNFQRLQ*

Sequence

>CNT30543529
GCATAATTCACATTCGTCTAAAAAGCCTTCAAGGAAAATTACAACTCCAACAACAAACCCAAATACAACATACATCAACGGACAAGGATTCATCTAAAAA
GAAGATCCAACGGCCACATAGAAATTCAATTACGATGCGAAATAAAAACAAATCATATTACAACAGTAATTTTCAGCGTCTTCAGTAATCAGTGGTGGGC
AATTGCTCGTGACCGTTTTCGATGATGTAAACAAAGTCGTAGATGATTCCGGCGAGTCCACCACCGACAAGAGGACCAACCCAGTAAATCCAGATGTTAG
CTCCGACGATGAAACCAATGGCGATGGGTGCGATAGTTCCGAGGCTACCGTTTTTGGGGTCGATGGCTGTGGCGTAGACGGTGTAGACAAGCCCGAAGGT
CATCACGATCTCGAAGACGAGACCGTTTAAGGTTCCAACTCCTGCCGAGAGACCGAACGCTGGAACTGCCTGAAAATTTAATGTTTTAAAAAAGGTAGGT
CAAAAGCGTGGTTTTAGTTGGAATATTCATTATGGATAACATAACAAACCGAACAAAAAAAAACTGGTCCAAATGAAGTTTTAGTTAGTTTGATTGTTTG
TTGCACAAAAAAAAAGTTAGTTTGACTGTTTTGTTTTTCTATGTAAATCAATATTAAATCCACGAAAACATAATTTTCTCATGTGAGTTAAAATACATTT
CACTAGAAATTAAGCATGAACAATTAATTAATTCGTACTATGTGATTTAAATTCAAGATAATATTAAAACTGAAAACCTCAAATTAGCTAGATAAACCGA
GCATATTGTTTTAGGTTTCTAACCATAAACTAAAATTAGCTACATACACCGAACATATTGTTTTAGATCCATTCAATAGTTTAATGGCTAATTTCTGAAA
CCAAAACATTAAACCGATTTAGTATAGTAATAATAAGTAAAAGACGTTACCA