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Detailed information on CNT30382112


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 4e-71

BLAST vs NONCODE:
NONPOPT001747, E-value = 5e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513316Manihot esculentaJuglans regia22.5818.3682.35119forward
CNT30500595Manihot esculentaCoffea canephora45.3531.4179.92239forward
CNT30282947Manihot esculentaChenopodium quinoa54.4623.5181.18287forward
CNT30401900Manihot esculentaBeta vulgaris53.3228.7380.43281forward
CNT30526451Manihot esculentaPhaseolus vulgaris29.4114.6280.65155forward
CNT30485914Manihot esculentaOlea europaea31.1220.4782.93164forward
CNT30708158Manihot esculentaGlycine max43.4527.6281.66229forward
CNT30562752Manihot esculentaActinidia chinensis27.5111.4686.21145forward
CNT30261767Manihot esculentaBrassica rapa15.3730.3483.9581forward
CNT30213985Manihot esculentaHelianthus annuus43.0742.7583.26227forward
CNT30360489Manihot esculentaLactuca sativa38.3318.681.19202forward
CNT3031825Manihot esculentaTheobroma cacao30.3631.9482.5160forward
CNT3023899Manihot esculentaPopulus trichocarpa52.5642.5585.92277forward
CNT30120621Manihot esculentaCitrus clementina38.5252.1981.28203forward
CNT30725365Manihot esculentaLupinus angustifolius47.0615.3180.65248forward

Expression of CNT30382112

Peptides detected in this lncRNA

>peptide 1 (90 aa)
CHVTPVSHSTLSAPRVANIAHLPWMSSHSLNLCNPKTSLYGWNGVDFTSATSVRVPIISPAEFLAKFWSKESNSNCKYSAGFPNPNGSNP*

>peptide 2 (76 aa)
LPCDSSEPLNTECPESSQHSPSSMDELALPEPLQPKNFAVWLERCRLHIGNLCACSNYITSRVLSQVLVQRVQLEL*

Sequence

>CNT30382112
CTTGCCATGTGACTCCAGTGAGCCACTCAACACTGAGTGCCCCGAGAGTAGCCAACATAGCCCATCTTCCATGGATGAGCTCGCACTCCCTGAACCTTTG
CAACCCAAAAACTTCGCTGTATGGCTGGAACGGTGTAGACTTCACATCGGCAACCTCTGTGCGTGTTCCAATTATATCACCAGCCGAGTTCTTAGCCAAG
TTCTGGTCCAAAGAGTCCAACTCGAACTGTAAATACTCTGCCGGTTTCCCTAATCCGAATGGGTCAAACCCATAATCTCCCACTAAGCTACCGTCGAGCC
ACTCCGGCCGGTCTGAGGTAGGCTTGCTTGATCTCTTGGGTGCGGACTTCTTGGCGCCAAATCCGAACCGAGCTTGAACACGACCTGAGTTGGTGGAAAT
ATCTGGTACGCGCGTTCCCATGAAGGATGACGCGGCGGCAGCAGCTGTGGAGGCAGCCATGGCCAGAGTCTAACGTGCGCTGAAAGATAGAATTAACGGG
AAGCTTGAAAGTGGAGGTGATTTGATA