Detailed information on CNT30401900


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 3e-112

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640553Beta vulgarisNymphaea colorata28.4334.5377.7278forward
CNT30513329Beta vulgarisJuglans regia28.3243.1580.51277forward
CNT30282946Beta vulgarisChenopodium quinoa83.5480.3389.72817forward
CNT30382112Beta vulgarisManihot esculenta28.7353.3280.43281forward
CNT30526506Beta vulgarisPhaseolus vulgaris31.3925.9183.39307forward
CNT30485914Beta vulgarisOlea europaea32.8240.0780.69321forward
CNT30502928Beta vulgarisNicotiana attenuata12.4734.5686.89122forward
CNT30708177Beta vulgarisGlycine max30.5728.4281.94299forward
CNT30221234Beta vulgarisHordeum vulgare14.1123.0480.43138forward
CNT30229721Beta vulgarisAnanas comosus31.3913.0779.15307forward
CNT30219415Beta vulgarisKalanchoe fedtschenkoi17.5955.1380.81172forward
CNT30213985Beta vulgarisHelianthus annuus29.8654.9979.45292forward
CNT30620949Beta vulgarisCajanus cajan31.3928.5382.74307forward
CNT30360807Beta vulgarisLactuca sativa12.6828.8481.45124forward
CNT3031825Beta vulgarisTheobroma cacao11.5522.5588.5113forward
CNT3023899Beta vulgarisPopulus trichocarpa25.1537.7980.89246forward
CNT30328621Beta vulgarisAsparagus officinalis22.874.8379.82223forward
CNT30120621Beta vulgarisCitrus clementina11.5529.0585.84113forward
CNT30725306Beta vulgarisLupinus angustifolius12.9950.681.89127forward

Expression of CNT30401900

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SPELHTEPYIFHGGNLRCLCIGSHLLNQS*

>peptide 2 (50 aa)
MGQTHNHPLSSHPTILGPWHLGTIMGGLCLILIWAELSWQPSWPQTQTGT*

>peptide 3 (56 aa)
MLMYRIPSSQSIIVTLQELVQDSSVERVTQVGSPVVKRTFTSNSSLNSKAKEGNHS*

>peptide 4 (74 aa)
MWSLRKEVVGQGDTSEPLNSQGTKSSQHGPSPMDQFTLPEPLQPKNLTVWLQGCGLDVRGLGPSSNDVTSQILG*

>peptide 5 (54 aa)
MAHLPWISSHSLNLCSPKTSLYGCRDVALTSADSVRVPMMSPAKFLAKFWSKPS*

>peptide 6 (57 aa)
MLDLCQLKDWLLFRVRRQAQWVETSTRVKPLFWVKLCIPLEFNKSNDQNLYPDQCGH*

Sequence

>CNT30401900
GCTCTCCTGAACTACACACTGAACCATACATATTTCATGGGGGTAATTTAAGATGCTTATGTATAGGATCCCATCTTCTCAATCAATCATAGTCACTCTA
CAGGAACTTGTCCAAGATAGTAGTGTGGAGCGGGTCACTCAAGTGGGTAGCCCAGTTGTTAAGCGGACCTTTACCAGTAACAGCAGCCTGAACAGCAAAG
CCAAGGAAGGCAACCATAGCTAGCCTGGCATGCTTGATCTCTGCCAACTGAAGGATTGGCTTCTTTTCCGGGTCAGACGCCAAGCCCAATGGGTCGAAAC
TTCCACCCGGGTAAAGCCTCTTTTCTGGGTCAAGCTCTGCATTCCTCTGGAATTCAATAAATCCAATGACCAAAACCTCTATCCAGATCAATGTGGTCAT
TGAGAAAGGAAGTGGTTGGCCAAGGTGACACCAGTGAGCCACTCAACAGTCAAGGCACCAAGAGTAGCCAACATGGCCCATCTCCCATGGATCAGTTCAC
ACTCCCTGAACCTCTGCAGCCCAAAAACCTCACTGTATGGCTGCAGGGATGTGGCCTTGACGTCCGCGGACTCGGTCCGAGTTCCAATGATGTCACCAGC
CAAATTCTTGGCTAAGTTCTGGTCCAAGCCATCATAGTCATATTGCAAATACTCTGCAGGCTTACCTAGCCCAAATGGGTCAAACCCATAATCACCCACT
AAGCTCCCATCCAACCATTCTGGGGCCTTGGCACCTGGGTACCATAATGGGCGGTCTGTGCTTGATCCTGATCTGGGCTGAGCTTTCTTGGCAACCTTCT
TGGCCCCAAACCCAAACCGGCACGTGATCCTCCCTGAATTTGATGGGACATCGGGAAGACGAGTCCCGATAAAAGACGAGGTGGCGGCAGTGGCGGAGGC
CGAGGCCATATTTGATTGTTTTGTAGGATGGGTGGTGGTTATAGGTGGTAAAGGCCTAGAAGGGGTGTGTAAGATTTT