Detailed information on CNT30708158


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000803, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520322Glycine maxSetaria italica32.5724.0484.07270forward
CNT30374725Glycine maxArabidopsis thaliana16.8932.1182.14140forward
CNT30282947Glycine maxChenopodium quinoa27.0218.3581.25224forward
CNT30382112Glycine maxManihot esculenta27.6243.4581.66229forward
CNT30221568Glycine maxHordeum vulgare31.8525.2184.85264forward
CNT30387274Glycine maxTriticum turgidum15.0827.986.4125forward
CNT30562752Glycine maxActinidia chinensis31.620.7185.11262forward
CNT30236263Glycine maxBrassica oleracea18.8232.183.97156forward
CNT30262014Glycine maxBrassica rapa15.6828.3283.85130forward
CNT30452520Glycine maxSaccharum spontaneum32.8118.1583.82272forward
CNT30132672Glycine maxLolium perenne28.8342.8383.68239forward
CNT30340460Glycine maxEragrostis tef32.813283.82272forward
CNT30478099Glycine maxArabidopsis halleri18.0921.2284.67150forward
CNT30596509Glycine maxOryza meridionalis29.7916.2583.81247forward
CNT30357622Glycine maxLactuca sativa24.8534.5680.58206forward
CNT30370789Glycine maxOryza glumipatula31.9719.2684.15265forward
CNT3031825Glycine maxTheobroma cacao18.3430.3486.18152forward
CNT3023899Glycine maxPopulus trichocarpa31.9740.7180265forward
CNT30120621Glycine maxCitrus clementina24.4952.1981.28203forward
CNT30581381Glycine maxEchinochloa crusgalli19.0656.8384.81158forward
CNT30496270Glycine maxDigitaria exilis27.7423.382.17230forward

Expression of CNT30708158

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMSPATFFARFWSSESNSNCRYSAGFPSPNGWLLLLRWPCWAYAKLGRLREKLSWEN*

>peptide 2 (96 aa)
MFDNSREPYLSGVLPCNTSEPLNSESSESGEHGPPPVNELALAEPLQPEHLAVGLERRGLHVRELGPGPNDVPSHVLRKVLVQRVQLELQVLGGLP*

Sequence

>CNT30708158
ATTCACAAACAAAATTCTGAAAATATCTTATGATTAAGGTGGGAGGGAGTATTTAATAGTAGATCTTATTCTTAAACTAATAGACTCACGTCAATTCCAA
TAAACAGATAGAAGTATCACGTGAATTTCAACAAACAGAAGGATATGTACTAGAAGTATTGTGTTATTATCAGATCTCTAATTATCATCATCATCATCAT
CAAACGATAGAAAATAGAAATGTTCGATAACAGCAGAGAACCGTACCTTTCCGGCGTCTTGCCATGTAACACCAGTGAGCCACTCAACAGTGAGAGCTCC
GAGAGTGGCGAGCATGGCCCACCTCCCGTGAATGAGCTCGCACTCGCGGAACCTCTGCAGCCCGAACACCTCGCTGTAGGGCTGGAACGGCGTGGACTTC
ACGTCCGCGAGCTCGGTCCTGGTCCCAATGATGTCCCCAGCCACGTTCTTCGCAAGGTTCTGGTCCAGCGAGTCCAACTCGAACTGCAGGTACTCGGCGG
GCTTCCCTAGCCCAAATGGGTGGCTGCTGCTGTTGCGGTGGCCATGCTGGGCTTATGCTAAATTGGGCCGGTTGAGAGAAAAATTGAGTTGGGAGAATTA
GTGGTTATTGTGAGAGAGAGGGATGGCAGATATATTTGACGAGGGAGGGGAGATTGGATATAATCTGTGAAGGGGGGTTTGGGGGCGTTAGATTTGGGTG
AGTATCCATCTGACGGTGGAGAAGAGGCTTCGACTTATCGTTATGTTTATCTGCAGGTGGTGACGTGGCGATGTTCGTGGGACCCGCTGGGTTTCTGATG
GTGATTGCTATACGTGGGAAATTTGTGGT