« Back to Brassica rapa search


Detailed information on CNT30262014


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 1e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672010Brassica rapaSetaria viridis28.121.982.95129forward
CNT30520532Brassica rapaSetaria italica28.115.4582.95129forward
CNT30374725Brassica rapaArabidopsis thaliana40.9643.1290.43188forward
CNT30281605Brassica rapaChenopodium quinoa20.0414.0988.0492forward
CNT30526451Brassica rapaPhaseolus vulgaris25.0510.8584.35115forward
CNT30485914Brassica rapaOlea europaea20.711.8687.3795forward
CNT30708158Brassica rapaGlycine max28.3215.6883.85130forward
CNT30562752Brassica rapaActinidia chinensis47.0617.0879.63216forward
CNT30236263Brassica rapaBrassica oleracea99.5694.0396.06457forward
CNT30554380Brassica rapaOryza glaberrima27.8911.5881.25128forward
CNT30454075Brassica rapaSaccharum spontaneum28.114.1382.95129forward
CNT30132672Brassica rapaLolium perenne44.6636.7479.02205forward
CNT30229721Brassica rapaAnanas comosus42.928.3979.19197forward
CNT30340460Brassica rapaEragrostis tef49.4626.7180.62227forward
CNT30478099Brassica rapaArabidopsis halleri43.7928.4388.06201forward
CNT30596509Brassica rapaOryza meridionalis27.898.4281.25128forward
CNT3031825Brassica rapaTheobroma cacao20.718.9685.2695forward
CNT3023899Brassica rapaPopulus trichocarpa27.2319.284125forward
CNT30328621Brassica rapaAsparagus officinalis25.4939.2684.62117forward
CNT30120621Brassica rapaCitrus clementina27.0231.8882.26124forward
CNT30581381Brassica rapaEchinochloa crusgalli25.9342.8183.19119forward
CNT30496270Brassica rapaDigitaria exilis23.9711.1482.73110forward

Expression of CNT30262014

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PVSHSTERAPRVASIAHLPWISSHSLNLWSPKTSLYG*

>peptide 2 (91 aa)
MFLAKFWSRESRSNWRYSADFAPGNHRGRSEITVLAFLGAAAFLVPNPNRAVNLLEPELMSETTRVPMMEEAAAAVEVAAISRVCLCLARL*

>peptide 3 (41 aa)
TGEPLDGESTESCKHSPSPVDQLTLSEPLEPKDLTVRLKRR*

Sequence

>CNT30262014
CACCGGTGAGCCACTCGACGGAGAGAGCACCGAGAGTTGCAAGCATAGCCCATCTCCCGTGGATCAGCTCACACTCTCTGAACCTCTGGAGCCCAAAGAC
CTCACTGTACGGCTGAAACGGCGTTGACTTGGGGTCAGCGGCCTCGGTACGGGTCCCGATCACGTCTCCGGCTATGTTCTTGGCTAAGTTCTGGTCCAGA
GAGTCAAGATCAAACTGGAGATACTCCGCCGATTTCGCGCCTGGGAACCACAGAGGCCGGTCTGAGATAACCGTCTTAGCCTTCTTGGGAGCTGCGGCCT
TCTTGGTCCCGAATCCAAACCGGGCTGTGAACCTGCTTGAACCGGAGTTGATGTCGGAAACCACCCGAGTACCCATGATGGAAGAAGCAGCAGCGGCTGT
TGAAGTGGCGGCCATCTCGAGAGTTTGTTTGTGTTTAGCACGTTTGTGAGTTGGGGTGT