CANTATAdb - search

Detailed information on CNT30357882

BLAST search results

BLAST vs Swiss-Prot:
sp|Q07473|CB4A_ARATH, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30708157	Lactuca sativa	Glycine max	38.26	29.96	80.67	269	forward
CNT30261767	Lactuca sativa	Brassica rapa	16.93	44.57	82.35	119	forward
CNT30213985	Lactuca sativa	Helianthus annuus	60.31	79.85	81.37	424	forward
CNT3023899	Lactuca sativa	Populus trichocarpa	21.19	22.89	81.21	149	forward

Expression of CNT30357882

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MYPITKTSIQIKVVIEKGNANIAHLPCISSHSLNL*

>peptide 2 (33 aa)
MKEDVAAAAAAVDAMTVGDGGYCAPVCRGISVGS

>peptide 3 (65 aa)
HSKTSMLDLRQLKNSFLFRVSCQVQWIEWTTWVESFLRFQFSVPLKLNVSDNQNLDPNQSSDREG*

>peptide 4 (45 aa)
MSPNQTEDTQRVYLDQMGQTRSLQPGFHRDTPALLHLDTITAGRM*

Sequence

>CNT30357882
CCATAGCAAGACGAGCATGCTTGATCTCCGCCAATTGAAGAACAGCTTTCTTTTCAGGGTCAGCTGCCAAGTTCAATGGATCGAATGGACCACCTGGGTA
GAGTCTTTTCTCAGGTTCCAGTTCAGCGTTCCTTTGAAACTCAATGTATCCGATAACCAAAACCTCGATCCAAATCAAAGTAGTGATAGAGAAGGGTAAC
GCCAACATAGCCCATCTCCCGTGTATCAGTTCGCACTCCCTGAACCTCTGAAGCCCAAACACCTCGGTGTATGGTTGGAAAGGAGTCGACTTCACGTCCT
CATTCTCGAACCTGGTTCCGATCACGTCCCCAGCCAAGTTCTTAGCCAAGTTTTGATCCAATGAGTCCAAATCAAACTGAAGATACTCAGCGGGTTTACC
TAGACCAAATGGGTCAAACCCGTAGTCTCCAACCAGGCTTCCATCGAGATACTCCGGCGCTTTTGCACCTGGATACCATAACGGCCGGTCGGATGTGACG
GGTTTGGACACTTTCTTAGGTGCTGCTTTCTTCTTTCCGAAGGAAAACCGGGCCGTGACTCGACCAGAACTGGAATGCAGTTCCGGGAGACGGGTTCCCA
TGAAAGAAGACGTGGCGGCGGCCGCAGCTGCGGTGGATGCCATGACTGTCGGTGATGGAGGCTACTGTGCTCCGGTTTGTCGTGGGATAAGTGTGGGTTC
AAG