Detailed information on CNT3038106


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Cucumis meloManihot esculenta20.3615.9684.16101forward
CNT30544167Cucumis meloBrassica napus20.9720.1682.69104forward
CNT30238557Cucumis meloBrassica oleracea20.9715.8382.69104forward

Expression of CNT3038106

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIQKILVRSNTSNKTLYKVTQNCQHCKPSILNFLQLQFLH*

>peptide 2 (34 aa)
MAPAAPNIANLPLITSPYANHFGSMNPPVPSGSDS

>peptide 3 (33 aa)
MAHQGLFLVGSTPVIQRSLGLWLLLLPTLQTFR*

Sequence

>CNT3038106
CTCAAATCATGTTACAATAGAGTGGGGGAAACAATTTTTGAAAGCTCCAAAGCAACCCAAAGGGGATTGTGATCCATATTAATATACATTACACAAATTA
CAATTCACATATAAACCCTTCTAGTGGAATTTAAGGCTGGTCAAAATATTGTTGTTGACAGGGTCAGACAAATGATCCAAAAGATTTTGGTAAGGTCCAA
CACCAGTAACAAGACCTTGTATAAAGTAACCCAAAATTGCCAACATTGCAAGCCTTCCATTCTTAATTTCCTTCAACTTCAATTCCTTCATTGACTTCTC
ATCTTTACCAAACCCTAGTGGGTTGAACAATGGCCCACCAGGGGCTGTTTCTGGTGGGATCAACCCCAGTGATCCAAAGATCTCTGGGGCTATGGCTCCT
GCTGCTCCCAACATTGCAAACCTTCCGTTGATCACTTCGCCGTATGCCAACCATTTTGGCTCGATGAACCCTCCTGTGCCTTCGGGATCAGATAGC