Detailed information on CNT30348036


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522474Eragrostis tefSetaria italica44.0151.0486.59246forward
CNT30187034Eragrostis tefSecale cereale20.5724.2688.7115forward
CNT30555088Eragrostis tefOryza glaberrima45.832.0489.06256forward
CNT30100835Eragrostis tefOryza rufipogon30.2338.3285.21169forward

Expression of CNT30348036

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MRLRSMGRLRMRLRSMGRLRLMPSTLALMAVQRQTAASRSTSPPSSEQHGSYWGSPTLTRFSTLAHTFSFSASIGHLPCPGVD

>peptide 2 (39 aa)
MDTITNGSTTPCVNKITKMGWKKICNEKLIRSCNGRARH*

Sequence

>CNT30348036
AGCACTTTTTCGATAATCAACAAACACATACCGTCTTACATTGAATGGACACAATTACAAATGGTAGTACAACTCCATGCGTGAACAAAATTACAAAGAT
GGGGTGGAAAAAAATCTGTAACGAGAAACTTATTCGATCGTGCAACGGCCGAGCTAGACATTAAGCCAGCTGCCGCTGCAAGAATGAAATCGACTTTGGG
AAGAACACGCGACAGAGAGCACAAGCATGCACATTTGGTACGTAGCTCCTCATCAGCTTAGTTGGGGCACTTGAAGTCTTCAGGGCAGTACTTGCCGCAG
TTGTTGAGGATGAGGCTGAGGTCGATGGGCAGGTTGAGGATGAGGCTGAGGTCGATGGGCAGGTTGAGGTTGATGCCGAGCACGTTGGCCTTGATGGCGG
TGCAGAGGCAGACGGCGGCGTCCAGGTCGACGAGCCCGCCCAGCAGCGAGCAGCACGGCTCGTACTGGGGCAGCCCGACCTTGACGAGGTTCAGCACGTT
GGCGCACACCTTCAGCTTCAGCGCGTCGATCGGGCACTTGCCGTGCCCGGGGGTCGACG