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Detailed information on CNT30248153


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691814Avena sativaOryza sativa19.8820.2787.22133forward
CNT30187034Avena sativaSecale cereale17.4924.6885.47117forward
CNT30306637Avena sativaTriticum aestivum23.0217.884.42154forward
CNT30226858Avena sativaHordeum vulgare23.6256.2386.71158forward
CNT30685047Avena sativaTriticum urartu21.6727.4187.59145reverse complement
CNT30596899Avena sativaOryza meridionalis19.8821.2584.96133forward
CNT30100835Avena sativaOryza rufipogon19.8830.1686.47133forward
CNT30116402Avena sativaOryza nivara17.1931.0886.09115forward

Expression of CNT30248153

Peptides detected in this lncRNA

>peptide 1 (31 aa)
ALRAKSAAFQFIAYVADRYNVINPLPDKPAA*

>peptide 2 (73 aa)
MSSYLTVPSHDPANALVVLTESKTNGLKPIYLVVITDDTHGIIQLGKIQTDKFQAVAESCLKLHSDELIPSEF*

Sequence

>CNT30248153
TTGCGCTGCGTGCAAAGTCTGCAGCTTTTCAGTTTATTGCTTATGTAGCTGATCGTTACAACGTGATCAACCCACTGCCCGACAAACCAGCTGCATGAGC
TCCTATCTGACCGTGCCGTCCCACGATCCAGCTAATGCGCTAGTAGTGCTAACTGAAAGCAAAACAAACGGTCTAAAGCCTATCTACCTCGTGGTGATCA
CAGACGACACACACGGAATTATTCAGCTAGGGAAAATACAAACTGACAAGTTTCAGGCTGTTGCCGAAAGCTGTCTGAAACTGCACAGTGACGAGCTTAT
TCCGTCAGAGTTCTAACAAGGCAGACAGCGGCGTCCAGGTCGGCGAGCCCAGACAGCAGCGGGCAGCACTGCTCGGGCGACGGCACACCGAGGTTGAGCT
TGAGCAGGTTCAGCACGTTTGCGCACACGCTCAGCTTCAGCGTGTCGATCGAGCAGGTGCCGCCGCCGGTCGACGGGCTTGGGGGCACGGGCGTCGGGGT
CATTGGAGGTGGCGGAGGGACGACGAACGGAGGGGTTGGGACCGGGGTGGGGTTGCAGTTGTATGACCCACAGCCGTTCACGGCGGCGAGGAGGGCCAGG
TTCACGGCGAGGAAGAGGGTGAGCTTGGAGGGCGCCATTTCTATGCTTGGCTAGCTATATAGGCTTCGC