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Detailed information on CNT30392194


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Triticum turgidumOryza sativa21.0910.5187.6581forward
CNT30678375Triticum turgidumSetaria viridis21.0921.686.4281forward
CNT30187034Triticum turgidumSecale cereale22.418.1494.1986forward
CNT30296862Triticum turgidumTriticum aestivum20.3116.3594.8778forward
CNT30226858Triticum turgidumHordeum vulgare23.9632.7488.0492forward
CNT30553070Triticum turgidumOryza glaberrima21.0910.0687.6581forward
CNT30247419Triticum turgidumAvena sativa15.8926.7590.1661reverse complement
CNT3067194Triticum turgidumLeersia perrieri21.0914.0485.1981forward
CNT30685047Triticum turgidumTriticum urartu25.7818.7193.9499reverse complement
CNT30596926Triticum turgidumOryza meridionalis21.098.588.8981forward
CNT30369731Triticum turgidumOryza glumipatula21.099.5187.6581forward
CNT30100588Triticum turgidumOryza rufipogon21.0929.8987.6581forward
CNT30575711Triticum turgidumOryza barthii21.0911.2387.6581forward
CNT30116276Triticum turgidumOryza nivara21.099.9587.6581forward

Expression of CNT30392194

Peptides detected in this lncRNA

>peptide 1 (73 aa)
CIQAGNISRVQLTQVESFYSTYVYKYVYHFTNMQTMHLDDIISKCSDQQEYLINDECDDDQLEEETKYVTACV*

>peptide 2 (29 aa)
MQTSDDCDHDDAWFVMHRSMDDGWISWGR*

>peptide 3 (32 aa)
MMGGSAGAGEVGGASLAALVEEEHEVDGDVEVD

Sequence

>CNT30392194
TGCATACAAGCTGGCAATATATCACGGGTTCAGTTAACACAAGTTGAATCATTTTATTCCACGTACGTGTACAAGTATGTATATCATTTTACAAATATGC
AAACCATGCATTTAGATGATATCATATCGAAATGCAGTGATCAACAAGAGTATCTTATAAATGACGAGTGTGATGACGACCAACTGGAAGAGGAAACAAA
ATATGTAACTGCATGCGTATGACATGCAAACCAGTGACGATTGTGACCACGACGATGCATGGTTTGTGATGCATCGATCGATGGATGATGGGTGGATCAG
CTGGGGCAGGTGAAGTCGGCGGGGCAAGTCTTGCCGCACTGGTTGAGGAGGAGCACGAGGTCGACGGGGACGTTGAGGTTGATG