« Back to Oryza meridionalis search


Detailed information on CNT30596922


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 8e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Oryza meridionalisOryza sativa59.2167.9693.13524forward
CNT30671301Oryza meridionalisSetaria viridis21.9255.2786.6194forward
CNT30187034Oryza meridionalisSecale cereale25.7648.188.16228forward
CNT30308206Oryza meridionalisTriticum aestivum26.2138.5487.07232forward
CNT30226858Oryza meridionalisHordeum vulgare26.2182.5687.93232forward
CNT30553070Oryza meridionalisOryza glaberrima59.2165.0993.13524forward
CNT30369850Oryza meridionalisOryza glumipatula59.2164.9393.13524forward
CNT30575612Oryza meridionalisOryza barthii59.2166.2592.94524forward

Expression of CNT30596922

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTPSFSASIGHLFPPPPPPDGGGITGGVGVGQ*

Sequence

>CNT30596922
CGGAAAACAGGCTTAATTAATTTGTTAATGAGCAGATAGATAGATAGATAGATAGATAGTAGCACAAGTAGTACACTGGAGGAAACTTTTATTTGACAGT
ACGCATTAAAATAACAAGATACATAGATGATCGATCTGATGATCAATCACTGATCGATAGATCGAGATAAAAGTACGTAGAGTACAGTTGATATATATCG
ACATATATATGTATGACAACTGCAACACACAGTAATACGCGACTAAGCCATGCATGCAAAGCTTAAGCCTTAGCGGTAGCTAGGGTTGTGGTGGTAATGA
AGAATTAATCAGAGTGGGCAGGAGAAGTCGGAGGGGCAGGTCTTGTGGCAGTAGTTGAGGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGA
GGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGAT
CTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGATCGGGCACTTATTCCCTCCACCGCCACCACCCGACGGCGGCGGC
ATCACCGGCGGGGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTGCATGGTGATGAGCACATTGAGGGCAAGGAACAGCGCAC
AGACCTGCACCTTCTTCTTGCCGCCCATCGTCTTAATTAATTAAGTAGCTACTACTGCTTAGCAATCAGCAGCTTCTGCCTATATATAGCTCAGCTCGTT
CGATCGATCAGAAGAAGAAGCTGGAGCTGGAGATGGAGCTGCCTTTTGATATTAATTTGCTAGCTAGCTCGATCGGCCGGGATGC