Detailed information on CNT30727290


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547454Corchorus capsularisIpomoea triloba27.2125.390.3683forward
CNT30618136Corchorus capsularisSesamum indicum25.2513.5390.9177reverse complement
CNT30382472Corchorus capsularisManihot esculenta26.2326.239080forward
CNT30406606Corchorus capsularisBeta vulgaris27.8727.5189.4185forward
CNT30526259Corchorus capsularisPhaseolus vulgaris48.8548.8585.91149forward
CNT30629861Corchorus capsularisVigna unguiculata22.9514.7792.8670forward
CNT30506943Corchorus capsularisNicotiana attenuata49.1849.1882.67150forward
CNT30711330Corchorus capsularisGlycine max37.737.9586.96115forward
CNT3044357Corchorus capsularisPrunus dulcis46.5646.7187.32142forward
CNT30158859Corchorus capsularisPistacia vera28.5230.3189.6687reverse complement
CNT30587521Corchorus capsularisMusa acuminata29.5127.5288.8990forward
CNT3085911Corchorus capsularisVigna radiata23.282.1991.5571forward
CNT30238127Corchorus capsularisBrassica oleracea25.925.989.8779forward
CNT30171637Corchorus capsularisTrifolium pratense39.6740.0785.12121forward
CNT3015222Corchorus capsularisZea mays28.8529.7387.588forward
CNT30648233Corchorus capsularisRosa chinensis28.8528.6689.7788forward
CNT30210362Corchorus capsularisHelianthus annuus52.4652.1285160forward
CNT30479039Corchorus capsularisArabidopsis halleri37.3837.2587.72114forward
CNT30619930Corchorus capsularisCajanus cajan46.8923.7983.22143forward
CNT30154558Corchorus capsularisPrunus persica48.248.0484.35147forward
CNT30408305Corchorus capsularisPapaver somniferum24.9226.390.7976reverse complement
CNT30572433Corchorus capsularisVitis vinifera46.2325.5984.4141reverse complement
CNT30706625Corchorus capsularisPrunus avium40.666.4883.87124forward
CNT30644781Corchorus capsularisCannabis sativa30.1639.4891.392reverse complement
CNT3030733Corchorus capsularisTheobroma cacao57.0557.4387.36174forward
CNT30175002Corchorus capsularisVigna angularis25.926.4292.4179forward

Expression of CNT30727290

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MWSERRLGPSWLLERRAPREAGFTEQRKPPAFDSGRITGQCILDPICLVDRDQSDNHL

>peptide 2 (43 aa)
MTRSNRQGLLVRLSGLPVPSRELNHVVRAKAWALVAPREEGTA*

Sequence

>CNT30727290
GCCGAGCTGGGTAACGCTAGTTTGTGACCCGAGTGGGGGCATTGAGATGATTGGACAATGACTCGGTCCAACAGGCAGGGTCTGTTGGTGCGACTCTCTG
GCCTGCCCGTTCCAAGTAGAGAGTTGAATCATGTGGTCCGAGCGAAGGCTTGGGCCCTCGTGGCTCCTAGAGAGGAGGGCACCGCGTGAGGCTGGTTTCA
CAGAGCAGCGAAAACCTCCCGCTTTCGACAGTGGAAGGATAACGGGCCAGTGCATCCTAGACCCAATTTGTCTGGTGGACCGAGATCAATCGGACAATCA
CCTTT