« Back to Brachypodium distachyon search


Detailed information on CNT30148670


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672296Brachypodium distachyonSetaria viridis73.185.3490.62693forward
CNT30519947Brachypodium distachyonSetaria italica71.8478.187.08681forward
CNT30191122Brachypodium distachyonSecale cereale73.5253.1291.82697forward
CNT30305431Brachypodium distachyonTriticum aestivum72.1559.4392.4684forward
CNT30226205Brachypodium distachyonHordeum vulgare70.9965.2190.64673forward
CNT30398794Brachypodium distachyonTriticum turgidum58.3368.1991.5553forward
CNT30242920Brachypodium distachyonAvena sativa73.197.1992.21693forward
CNT30669573Brachypodium distachyonTriticum dicoccoides77.6475.0390.08736forward
CNT30476616Brachypodium distachyonSaccharum spontaneum72.3653.3487.32686forward
CNT30141474Brachypodium distachyonLolium perenne74.7977.1592.81709forward
CNT30229013Brachypodium distachyonAnanas comosus72.0543.3187.55683forward
CNT30689773Brachypodium distachyonTriticum urartu76.0550.0792.37721forward
CNT30722025Brachypodium distachyonTriticum spelta73.4278.5690.8696forward
CNT30338865Brachypodium distachyonEragrostis tef72.5755.5386.92688forward
CNT30576634Brachypodium distachyonOryza barthii73.4264.8691.24696forward
CNT30583253Brachypodium distachyonEchinochloa crusgalli73.4232.8589.22696forward
CNT30593897Brachypodium distachyonEragrostis curvula72.3661.0989.94686forward

Expression of CNT30148670

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPSLSWILAFTLSIVSEDSTSSVMVLPVRVFTKICIC*

>peptide 2 (61 aa)
MSLCWSGGMPSLSWIFAFTLSMVSEDSTSSVMVLPVRVLTKICMPPRSLSTKWSVDSFWML*

>peptide 3 (61 aa)
MRRCWSGGMPSLSWILAFTLSIVSDDSTSSVMVLPVRVFTKICMPPRRRRTRWRVDSFWML*

>peptide 4 (63 aa)
MDRHLLATTEAEHQVKGGLLLDVVVRQGAAILKLLTSEYETLLVWGDAFLVLDLGLHIVNSVR*

Sequence

>CNT30148670
GACCACAACAGCGAACAGATGTCAGACAGTAGAATTACACACGGGCTCACTTATTCATCATAATAGTTCATAACGCTGCTACCGCAGCAGAAGTTCTGGT
ACACAGGCATAACACTGACGACAGTACTGTAGGAACAAACACACGATCAGATCAAAGATAAGACTCAGACACGCGACAACTCCACCGGAGGACACCCTGA
ACCAGACTTGTGAACCCAGACAGAAGCAAGTCCATGGACAGGCACTTACTGGCCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATG
TTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAATATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT
TCACATTGTCAATAGTGTCAGATGACTCAACTTCAAGCGTGATGGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGCATGCCACCGCGGAGGCGGAGGAC
AAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG
ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGA
TCTGCATGCCACCACGCAGCCTGAGCACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGC
GAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATG
GTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTTAACACGAA