Detailed information on CNT30672296


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-152

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30305431Setaria viridisTriticum aestivum82.6458.391.51671forward
CNT30398794Setaria viridisTriticum turgidum67.7367.8290.55550forward
CNT30553813Setaria viridisOryza glaberrima84.7373.5887.65688forward
CNT30242302Setaria viridisAvena sativa85.2267.1291.33692forward
CNT30669573Setaria viridisTriticum dicoccoides85.3470.6490.04693forward
CNT30445203Setaria viridisSaccharum spontaneum85.153.1189.15691forward
CNT30142093Setaria viridisLolium perenne85.2272.3892.34692forward
CNT30363345Setaria viridisSorghum bicolor84.8575.6388.53689forward
CNT30370375Setaria viridisOryza glumipatula85.172.4387.55691forward
CNT30148670Setaria viridisBrachypodium distachyon85.3473.190.62693forward
CNT30100520Setaria viridisOryza rufipogon84.8569.4688.24689forward
CNT30576634Setaria viridisOryza barthii91.0168.8791.61739forward
CNT30583253Setaria viridisEchinochloa crusgalli90.2734.5990.18733forward
CNT30604086Setaria viridisOryza punctata84.8570.0989.7689forward

Expression of CNT30672296

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSLCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSIVSEDSTSRVIVLPVRVFTKICMPPRRRSTRWRVDSFWML*

>peptide 3 (75 aa)
RQKTPVTRTGHRPQDTQTISIREKARLVNPGTTAAPWPSELTGHPGGGAPGGGWTPSGCCSPPGCGHPPAACQQR*

>peptide 4 (53 aa)
MPSLSWILAFTLSIVSEDSTSRVMVLPVRVLTKICIPPLSLSTRWRVDSFWML*

>peptide 5 (59 aa)
AKDTRDSNRTQTTGHADNLHQRKSQTCEPRDDSSSMALRTYWPPRRRSTRWRVDSFWML*

Sequence

>CNT30672296
AGGCAAAAGACACCCGTGACTCGAACAGGACACAGACCACAGGACACGCAGACAATCTCCATCAGAGAAAAAGCCAGACTTGTGAACCCAGGGACGACAG
CAGCTCCATGGCCCTCAGAACTTACTGGCCACCCCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA
TCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCTGAGG
ACTCCACCTCAAGGGTGATAGTCTTGCCAGTGAGAGTCTTCACAAAAATCTGCATGCCACCCCGCAGACGGAGCACCAGGTGGAGGGTCGACTCCTTCTG
GATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG
GCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATTCCACCCCTGAGCCTGA
GCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGCCTCTGCTGGTCCGG
GGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACA
AAGATCTGCATC