Detailed information on CNT30576634


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 3e-112

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672296Oryza barthiiSetaria viridis68.8791.0191.61739forward
CNT30519947Oryza barthiiSetaria italica63.5678.2187.83682forward
CNT30191122Oryza barthiiSecale cereale64.5952.8291.92693forward
CNT30305431Oryza barthiiTriticum aestivum62.6358.3891.22672forward
CNT30226205Oryza barthiiHordeum vulgare62.7265.2191.38673forward
CNT30586586Oryza barthiiMusa acuminata64.4948.6688.01692forward
CNT30242864Oryza barthiiAvena sativa64.7772.7791.51695forward
CNT30669573Oryza barthiiTriticum dicoccoides64.8670.9590.66696forward
CNT30445203Oryza barthiiSaccharum spontaneum64.8653.589.8696forward
CNT30142093Oryza barthiiLolium perenne64.6872.5991.5694forward
CNT307928Oryza barthiiZea mays64.4958.0588.44692forward
CNT30685722Oryza barthiiTriticum urartu66.8241.2191.21717forward
CNT30722025Oryza barthiiTriticum spelta64.2177.7790.57689forward
CNT30364163Oryza barthiiSorghum bicolor64.9675.9389.24697forward
CNT30148670Oryza barthiiBrachypodium distachyon64.8673.4291.24696forward
CNT30583334Oryza barthiiEchinochloa crusgalli65.0532.4790.11698forward
CNT30593897Oryza barthiiEragrostis curvula64.2161.3593.03689forward

Expression of CNT30576634

Peptides detected in this lncRNA

>peptide 1 (33 aa)
CQTGSNTNVYSTQSEQEHNLDKFVCQIKFLSKT*

>peptide 2 (34 aa)
MIRDHLFIIVLPCCSTTAKRFRHHQTRLTDTHYR*

>peptide 3 (44 aa)
MPSLSWIFAFTLSIVSDDSTSRVMVLPVRVFTKICIPPLSLRTR*

>peptide 4 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICTHN

>peptide 5 (61 aa)
MRRCWSGGXPSLSWILAFTLSIVSEDSTSSVMVLPVRVLTKICIPPLSLSTRWRVDSFWML*

Sequence

>CNT30576634
TGCCAAACCGGTAGCAATACAAATGTGTACAGTACACAGTCAGAACAAGAGCATAATTTAGACAAATTTGTTTGTCAGATCAAATTTTTAAGCAAAACAT
AAGAAACAGCACAAAAGGGTATAGCAGAAGCAAAATTTGGATACAATGATTAGGGATCACTTATTCATTATAGTTCTTCCATGCTGCTCTACCACAGCAA
AACGTTTCAGACACCATCAAACCAGACTTACGGATACGCATTACAGGTAAATAGTACACAATGAAACGGGACACGACTAAGGACCAGACCAGACAACCAT
AGCTCCATTGGGGAAGACAATAGGCAGACTTGTGAACCCTAGAACAGCAGCAGCTCCATGGCTGAGGACTTACTGGCCACCACGGAGGCGGAGCACCAGG
TGGAGTGTTGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGC
CCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG
CATCCCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG
ATGAGACGCTGCTGGTCCGGGGGGATNCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCT
TGCCGGTCAGGGTCTTGACGAAGATCTGCATACCACCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGGTGC
GGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTC
CGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCACACACAAT