« Back to Hordeum vulgare search


Detailed information on CNT30226205


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 9e-164

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Hordeum vulgareOryza sativa93.964.985.55969forward
CNT30674319Hordeum vulgareSetaria viridis79.4682.2589.76820forward
CNT30528288Hordeum vulgareEucalyptus grandis88.7668.3687.34916forward
CNT3044330Hordeum vulgarePrunus dulcis86.4372.9485.54892forward
CNT30191816Hordeum vulgareSecale cereale100.6848.7890.471039forward
CNT30305252Hordeum vulgareTriticum aestivum80.8197.6690.77834forward
CNT30553681Hordeum vulgareOryza glaberrima83.1479.386.13858forward
CNT30242826Hordeum vulgareAvena sativa88.4773.0490.8913forward
CNT30669573Hordeum vulgareTriticum dicoccoides65.3168.7190.8674forward
CNT30445192Hordeum vulgareSaccharum spontaneum86.8264.8885.49896forward
CNT30141987Hordeum vulgareLolium perenne94.7765.0390.9978forward
CNT307928Hordeum vulgareZea mays88.6676.7687.65915forward
CNT30229013Hordeum vulgareAnanas comosus93.4161.1385.58964forward
CNT30217449Hordeum vulgareKalanchoe fedtschenkoi93.9964.2884.12970forward
CNT3067522Hordeum vulgareLeersia perrieri89.5374.7684.96924forward
CNT30652285Hordeum vulgareRosa chinensis88.6675.1885.46915forward
CNT30716337Hordeum vulgareMalus domestica golden85.9571.5986.92887forward
CNT30684712Hordeum vulgareTriticum urartu93.837.8391.01968forward
CNT30722465Hordeum vulgareTriticum spelta80.0473.1688.5826forward
CNT30348745Hordeum vulgareEragrostis tef94.0987.485.79971forward
CNT30364163Hordeum vulgareSorghum bicolor66.4774.7388.92686forward
CNT30595768Hordeum vulgareOryza meridionalis88.6666.5587.98915forward
CNT30704857Hordeum vulgarePrunus avium93.4161.0586.51964forward
CNT30110940Hordeum vulgareOryza longistaminata93.935.7385.66969forward
CNT30148670Hordeum vulgareBrachypodium distachyon65.2170.9990.64673forward
CNT30100520Hordeum vulgareOryza rufipogon66.1868.8588.29683forward
CNT30576634Hordeum vulgareOryza barthii65.2162.7291.38673forward
CNT30583334Hordeum vulgareEchinochloa crusgalli65.1231.2690.03672forward
CNT30116770Hordeum vulgareOryza nivara93.969.3185.96969forward
CNT30593897Hordeum vulgareEragrostis curvula88.5781.3990.48914forward
CNT30603673Hordeum vulgareOryza punctata65.0267.8590.01671forward
CNT30174646Hordeum vulgareVigna angularis83.2482.4486.5859forward

Expression of CNT30226205

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICIPPRSLSTRWRVDSFWML*

>peptide 2 (53 aa)
RGLNLQRDGLAGEGLDEDLHTTTEPEHQMESGLLLDVVVSKRTAILKLLAGED*

>peptide 3 (50 aa)
MPSLSWIFAFTLSMVSEDSTSNVMVLPVRVFTKICMPPRSLSTRWRVDSF*

>peptide 4 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICIPPRSLSTRWRVDSFWML*

>peptide 5 (37 aa)
EDSTSSVMVLPVRVLTKICIPPRSLSTRWRVDSFWML*

>peptide 6 (44 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTNICICKYKAKQT*

Sequence

>CNT30226205
CGAGGACTCAACCTCCAGCGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCACCACGGAGCCTGAGCACCAGATGGAGAGTGGACTCC
TTCTGGATGTTGTAGTCAGCAAGCGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA
TCTTTGCCTTCACATTGTCAATGGTGTCCGAAGACTCCACCTCCAATGTGATGGTCTTGCCGGTGAGGGTCTTTACAAAGATTTGCATGCCACCGCGAAG
CCTGAGCACCAGGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATTAGACGCTGCTGG
TCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCT
TCACAAAGATCTGCATACCACCGCGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCGAGCTG
CTTGCCAGCGAAGATTAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCA
AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCACCACGAAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGT
CTGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATTAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATT
GTCGATGGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAATATCTGCATCTGTAAATACAAAGCAAAGCAGACATAA
CCAGAGTAAGTTATGGTACAGGGATATGTGCA