Detailed information on CNT30519947


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-150

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670998Setaria italicaSetaria viridis74.0897.4493.5646forward
CNT30190365Setaria italicaSecale cereale74.8961.2688.51653forward
CNT30242436Setaria italicaAvena sativa78.189.9688.84681forward
CNT30461176Setaria italicaSaccharum spontaneum77.6419.8689.96677forward
CNT307928Setaria italicaZea mays78.157.1388.25681forward
CNT30229606Setaria italicaAnanas comosus76.8350.5785.97670forward
CNT30722025Setaria italicaTriticum spelta75.6974.4988.64660forward
CNT30364833Setaria italicaSorghum bicolor78.169.5688.11681forward
CNT30370375Setaria italicaOryza glumipatula76.3869.8186.34666forward
CNT30321313Setaria italicaAsparagus officinalis78.2152.0285.48682forward
CNT30148670Setaria italicaBrachypodium distachyon78.171.8487.08681forward
CNT30576634Setaria italicaOryza barthii78.2163.5687.83682forward
CNT30583684Setaria italicaEchinochloa crusgalli78.132.4489.87681forward
CNT30593848Setaria italicaEragrostis curvula78.176.3587.96681forward

Expression of CNT30519947

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVKVFTKICIPPLRRSTRWRVLSFWML*

>peptide 2 (34 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKIC

>peptide 3 (57 aa)
NITYSWLYHTAPPQQLFQVNTDTTRDNYTNTTDTSKTTPFMAETRQPRNSSSDDRIV*

>peptide 4 (53 aa)
KHHLFMVIPYCSTATTVSGKHRHNQRQLHKHHRYFKDDTLHGRDQTTQEQQLR*

>peptide 5 (61 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSKVMVLPVKVFTKICMPPLRRRTRWRVLSFWML*

Sequence

>CNT30519947
CAAACATCACTTATTCATGGTTATACCATACTGCTCCACCGCAACAACTGTTTCAGGTAAACACAGACACAACCAGAGACAACTACACAAACACCACAGA
TACTTCAAAGACGACACCCTTCATGGCAGAGACCAGACAACCCAGGAACAGCAGCTCCGATGACCGAATAGTTTAGTGCCCAGTTTAGTGCCCACCGCGG
AGACGAAGCACCAGGTGGAGAGTAGACTCCTTCTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCT
GGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCAATGGTGTCAGAACTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGT
CTTCACGAAAATCTGCATCCCACCCCTCAGGCGGAGCACGAGGTGGAGAGTGCTCTCCTTCTGGATGTTATAATCAGCTAGGGTGCGGCCATCCTCAAGC
TGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGAACTCTCAACCT
CCAAAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGCCTCCCCTGAGACGGAGAACCAGGTGGAGGGTGCTCTCCTTTTGGATGTTATA
ATCAGCGAGAGTGCGCCCATCCTCAAGCTGCTTGCCCGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA
TTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGC