Detailed information on CNT30242920


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30148670Avena sativaBrachypodium distachyon97.1973.192.21693forward

Expression of CNT30242920

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICI

>peptide 2 (44 aa)
MPSLSWILAFTLSMVSDDSTSRVMVLPVRVLTKICMPPRRRSTR*

>peptide 3 (53 aa)
MPSLSWIFALTLSMVSEDSTSRVMVLPVRVLTKICMPPRSLSTRWRVDSFWML*

>peptide 4 (65 aa)
PRDRCNSLLATTETEHQVKGGLLLDVVVRQGAAILKLLASEDQTLLVRGDALLVLDLGLHIVNGV*

>peptide 5 (71 aa)
QRQMQLLTGHHGDGAPSEGWTPSGCCSPPGCGHPQAACQRRSDAAGPGGCPPCPGSWPSHCQWCLMTPPPG*

Sequence

>CNT30242920
CCCAGAGACAGATGCAACTCCTTACTGGCCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCA
TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGATG
ACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATGCCACCACGGAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTG
GATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCTAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTC
GCCTTGACGTTGTCGATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCATGCCACCACGGAGCCTGA
GCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCGTCCTCTAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGG
GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACA
AAGATCTGCATCT