CANTATAdb - search

Detailed information on CNT30229013

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693916	Ananas comosus	Oryza sativa	72.42	76.49	83.89	1142	forward
CNT30641270	Ananas comosus	Nymphaea colorata	72.42	57.19	84.06	1142	forward
CNT30513318	Ananas comosus	Juglans regia	43.31	67.03	87.85	683	forward
CNT30727322	Ananas comosus	Corchorus capsularis	57.89	71.83	84.67	913	forward
CNT3044330	Ananas comosus	Prunus dulcis	57.51	74.16	84.23	907	forward
CNT30169882	Ananas comosus	Pistacia vera	72.29	55.26	83.42	1140	forward
CNT3094992	Ananas comosus	Solanum tuberosum	57.77	78.26	83.86	911	forward
CNT30191758	Ananas comosus	Secale cereale	68.42	70.85	86.47	1079	forward
CNT30305252	Ananas comosus	Triticum aestivum	54.09	99.88	85.11	853	forward
CNT30226205	Ananas comosus	Hordeum vulgare	61.13	93.41	85.58	964	forward
CNT30568725	Ananas comosus	Actinidia chinensis	71.46	97.16	82.17	1127	forward
CNT30538027	Ananas comosus	Brassica napus	72.35	60.18	82.21	1141	forward
CNT30553671	Ananas comosus	Oryza glaberrima	57.7	78.25	84.84	910	forward
CNT30312659	Ananas comosus	Camelina sativa	57.89	46.37	84.78	913	forward
CNT30141342	Ananas comosus	Lolium perenne	72.42	88.32	87.13	1142	forward
CNT30217449	Ananas comosus	Kalanchoe fedtschenkoi	70.64	73.82	84.38	1114	forward
CNT30128346	Ananas comosus	Corymbia citriodora	41.98	71.26	87.16	662	forward
CNT30716337	Ananas comosus	Malus domestica golden	67.79	86.28	83.91	1069	forward
CNT30623044	Ananas comosus	Daucus carota	70.89	56.69	82.29	1118	forward
CNT30685626	Ananas comosus	Triticum urartu	72.61	44.74	87.6	1145	forward
CNT30596296	Ananas comosus	Oryza meridionalis	72.42	82.93	85.03	1142	forward
CNT30704857	Ananas comosus	Prunus avium	72.86	72.77	84.94	1149	forward
CNT30110940	Ananas comosus	Oryza longistaminata	71.78	41.74	84.19	1132	forward
CNT30326890	Ananas comosus	Asparagus officinalis	57.89	73.99	84.88	913	forward
CNT30120599	Ananas comosus	Citrus clementina	56.12	88.77	84.97	885	forward
CNT30148670	Ananas comosus	Brachypodium distachyon	43.31	72.05	87.55	683	forward
CNT30116770	Ananas comosus	Oryza nivara	72.42	81.69	84.06	1142	forward
CNT30593897	Ananas comosus	Eragrostis curvula	57.77	81.12	86.61	911	forward
CNT30111644	Ananas comosus	Ficus carica	71.46	79.09	82.17	1127	forward
CNT30334105	Ananas comosus	Cynara cardunculus	70.89	47.41	82.92	1118	forward

Expression of CNT30229013

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (52 aa)
MSLCWSGGMPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICIPPRRRRTR*

>peptide 3 (39 aa)
MYMKYQSTKVRYSIAHNNLALSLFIRNHHKNIVEKFADN*

>peptide 4 (40 aa)
MVSELSTSRVIVFPVRVFTKICIPPRRRSTRWRVDSFWML*

>peptide 5 (60 aa)
MKGGFLLDVVVGEGAAVLELLPGEDETLLIRGNPLLVLDLGLHIVDGVGALHLKGDRLPR*

>peptide 6 (61 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVIVFPVRVLTKICIPPLSLSTRWRVDSFWML*

Sequence

>CNT30229013
CAGTCACCACATTAGATTTACCTAGACCTTAGAAGGTTGCATTCAATCAGCACAAGCTAGATAATCAATACCATAACCATATTATGTATATGAAATACCA
AAGCACGAAAGTACGATATAGCATAGCACACAATAACCTGGCATTATCTTTATTTATTAGAAACCACCACAAGAACATAGTAGAAAAGTTCGCAGACAAC
TGACCACAGAGAACAAAGCAAACGACATATAGAGTATATTATAGACCCACAGCAAAGAACACGAGACGAGACTCAATCAGATAATTCATAGAACAGGACG
CAGGCGCGAAGAGCGCGGATAATTGCCAGGGACCCCATCGATAGCACGTTGGAAGCTTACATACCACCGCGGAGGCGGAGCACGAGGTGAAGGGTGGATT
CCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCTGCAAAGATCAGACGCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTG
GATCTTCGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCGCGG
AGGCGGAGGACGAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCT
GGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATCGTCTTCCCCGTTAGGGT
CTTGACGAAGATCTGCATCCCACCCCTCAGCCTGAGCACGAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCGAGC
TGCTTCCCGGCAAAGATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCT
CGAGGGTGATCGTCTTCCCCGTTAGGGTTTTGACGAAGATCTGCATACCGCCGCGGAGACGGAGGACAAGATGAAGGGTGGATTCCTTTTGGATGTTGTA
GTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACA
TTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATACCGCCGCGGAGACGGAGCACAAGGT
GGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGGGGAATCCC
CTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATCGTCTTTCCGGTGAGGGTTTTCACGAAGATCTGC
ATCTAGAGGAAGCACCTTGGAAGGAGATTGGGATCTCGGAACTCTGTTTCTAGGGTTTTCGAAGCGATGGGATGAGG