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Detailed information on CNT30476616


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30722025Saccharum spontaneumTriticum spelta50.7873.788.67653forward
CNT30368271Saccharum spontaneumSorghum bicolor86.4797.1293.881112forward
CNT30148670Saccharum spontaneumBrachypodium distachyon53.3472.3687.32686forward

Expression of CNT30476616

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FDTSMDKTFVINSSRPQTSPYAKTHISGQDGLQ*

>peptide 2 (30 aa)
MVFPVRVLTKICMPPLSLSTRWRVDSFWML*

>peptide 3 (40 aa)
MVSDDSTSSVMVFPVRVFTKICIPPRRRSTKWRVDSFWIL*

>peptide 4 (44 aa)
STPAWIKHLSSIVRDLRHHHTPKHIYLAKMASNSLNVRIQHLHS*

>peptide 5 (45 aa)
MYESNTCTVNTQVNLIAGYQRETAKANQVNLLLHISTSLQDSTSQ*

>peptide 6 (37 aa)
MVSEDSTSSVMVLPVRVLTKICMPPLRRRTRWRVDSF*

Sequence

>CNT30476616
TTCGACACCAGCATGGATAAAACATTTGTCATCAATAGTTCGAGACCTCAGACATCACCATACGCCAAAACACATATATCTGGCCAAGATGGCCTCCAAT
AGTTTGAATGTACGAATCCAACACTTGCACAGTTAACACACAGGTAAATTTGATAGCAGGCTATCAGAGAGAAACAGCTAAGGCAAACCAAGTTAACTTG
CTGTTGCACATCAGCACAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGCATGGAAACACACACGGCAACCAAACAGTGCACACCACTGAGAGA
ACCACCCAGACGAACAACTTCGATTAATTACTGACCACCACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG
AGCGTGCGTCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATTCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAA
TGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTTTTCACAAAGATTTGCATACCACCACGAAGGCGGAGCACCAAGTGGAGGGT
GGACTCTTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTG
TCTTGAATCTTTGCCTTCACGTTATCGATGGTGTCAGAAGACTCAACTTCAAGCGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATGCCTC
CCCTGAGGCGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAAGGTACGGCCATCCTCAAGCTGCTTGCCAGCGAAGATTAGCCG
CTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATCGTATCAGAGGACTCAACCTCAAGAGTGATGGTCTTCCCTGTG
AGGGTCTTGACAAAGATCTGCATGCCACCCCTAAGCCTGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATGTTATAATCAGCGAGCGTCCGCCCATCCT
CAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGTGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTATCTGAGGACTC
AACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCTGCATCTGCATAAACAAAAATCACATGGTAAGAC