« Back to Triticum aestivum search


Detailed information on CNT30305431


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 7e-148

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Triticum aestivumOryza sativa57.8630.5289.79666forward
CNT30672296Triticum aestivumSetaria viridis58.382.6491.51671forward
CNT30398809Triticum aestivumTriticum turgidum69.7761.0697.63803forward
CNT30141487Triticum aestivumLolium perenne58.6473.4593.19675forward
CNT30689164Triticum aestivumTriticum urartu68.38100.3897.71787forward
CNT30148670Triticum aestivumBrachypodium distachyon59.4372.1592.4684forward
CNT30576634Triticum aestivumOryza barthii58.3862.6391.22672forward
CNT30603673Triticum aestivumOryza punctata57.6967.1488.4664forward

Expression of CNT30305431

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTPPECPTMLLVDKYGYSDERSLYDNQRCNCHKVPYSRTNKCKVQYSYE*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLSVRVFTKICMPPRSLSTKWRVDSFWMS*

>peptide 3 (35 aa)
MRRCWSGGMPSLSWILALTLWMVSEDSTSRVMVLPV

>peptide 4 (78 aa)
MSEASMITKDVIATKYHIVELTNARYNIHMNRDEMHQIEANKRKHRITRSCRHNSGLTYLSSSPKLFTTAAILKNNRT*

>peptide 5 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSRVMVLPVRVFTKICMPPRSLSTRWRVDSFWML*

Sequence

>CNT30305431
GTGCTATTAGCTTCACAGGACAAGACATGATCAAAATTTACGGCATAAGAAACTACATTCCATGACCCCACCAGAGTGCCCGACCATGCTGCTTGTCGAC
AAATACGGCTACTCTGATGAGCGAAGCCTCTATGATAACCAAAGATGTAATTGCCACAAAGTACCATATAGTCGAACTAACAAATGCAAGGTACAATATT
CATATGAATAGAGATGAAATGCATCAGATAGAAGCAAACAAAAGAAAACACAGGATAACTCGCAGCTGCAGACACAATTCAGGGCTCACTTATTTATCAA
GTTCACCAAAGCTGTTCACAACAGCAGCAATTCTCAAAAACAACCGAACATAACGATGCATCACACTACGGTAGAAACATAGAAACGACCAGGACGACAG
ACACAGGCACCATTCGAGGACATATCAAAGACACAAGACCTGTGAACCCAACCCACAGAGAAGCCGCTCCATTGACAGGCACTTACTGGCCACCACGGAG
ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGG
TCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCCGAGGACTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCT
TCACAAAAATCTGCATGCCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTG
CTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCCGACGACTCGACCTCG
AGGGTGATGGTCTTGTCGGTGAGGGTCTTCACAAAGATCTGCATGCCACCACGGAGCCTTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTCGTAGT
CAGCCAGGGTGCAGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT
GTGGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG