Detailed information on CNT30722025


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-153

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674319Triticum speltaSetaria viridis72.9164.7990.87646forward
CNT30519947Triticum speltaSetaria italica74.4975.6988.64660forward
CNT30192091Triticum speltaSecale cereale78.180.7591.04692forward
CNT30242436Triticum speltaAvena sativa75.488.2492.22668forward
CNT30476616Triticum speltaSaccharum spontaneum73.750.7888.67653forward
CNT30141474Triticum speltaLolium perenne75.9673.2393.16673forward
CNT30689774Triticum speltaTriticum urartu89.8486.5295.23796forward
CNT30368619Triticum speltaSorghum bicolor74.2757.0288.91658forward
CNT30148670Triticum speltaBrachypodium distachyon78.5673.4290.8696forward
CNT30576634Triticum speltaOryza barthii77.7764.2190.57689forward
CNT30583334Triticum speltaEchinochloa crusgalli77.231.8188.45684forward
CNT30593848Triticum speltaEragrostis curvula75.0674.5591.28665forward

Expression of CNT30722025

SRR9114152: 25.34 RPKM

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSSVMVLPVRVLTKICIPPLRRSTRWRVDSFWML*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSKVMVLPVRVLTKICIPPLRRSTRWRVDSFWML*

>peptide 3 (63 aa)
MARHLLATTETEHQVEGGLLLDVVVSEGAAVLELLTSKDEALLVRWDALLVLDLRLHIVNGVR*

>peptide 4 (35 aa)
MRRCWSGGMPSLSWIFALTLSIVSEDSTSRVMVLPV

>peptide 5 (60 aa)
QGSLIHSFHSSSKSAAVRKFTDTTKHKYITLDHSTVATKHKTRRGHTDNPIGGHRKATDL*

>peptide 6 (29 aa)
FRAHLFIHFTVHPNLLRSESSRTQPNIST*

Sequence

>CNT30722025
TTCAGGGCTCACTTATTCATTCATTTCACAGTTCATCCAAATCTGCTGCGGTCAGAAAGTTCACGGACACAACCAAACATAAGTACATAACACTAGACCA
CAGCACGGTAGCAACAAAGCACAAGACCAGACGAGGACACACTGACAATCCGATCGGAGGACACAGAAAGGCAACCGACTTGTGAGCCCACAGACATAAG
CAGCTCCATGGCCAGGCACTTACTGGCCACCACGGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTC
CTCGAGCTGCTTACCAGCAAAGATGAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGATGAC
TCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATACCACCCCTGAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGA
TGTTGTAGTCAGCGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTTGC
CTTCACGTTGTCAATGGTGTCGGATGACTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATACCACCCCTGAGGCGGAGC
ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAG
GGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCGGTG