CANTATAdb - search

Detailed information on CNT30338865

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-117

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30538027	Eragrostis tef	Brassica napus	85.88	56.12	82.05	1064	forward
CNT30242602	Eragrostis tef	Avena sativa	73.93	80.14	87.01	916	forward
CNT30474769	Eragrostis tef	Saccharum spontaneum	68.2	69.32	89.82	845	forward
CNT3067522	Eragrostis tef	Leersia perrieri	73.77	73.95	85.56	914	forward
CNT30689814	Eragrostis tef	Triticum urartu	86.76	56.58	87.35	1075	forward
CNT30368619	Eragrostis tef	Sorghum bicolor	73.53	78.94	88.36	911	forward
CNT30321313	Eragrostis tef	Asparagus officinalis	86.6	81.85	82.2	1073	forward
CNT30148670	Eragrostis tef	Brachypodium distachyon	55.53	72.57	86.92	688	forward
CNT30583253	Eragrostis tef	Echinochloa crusgalli	55.53	32.47	86.92	688	forward
CNT30593311	Eragrostis tef	Eragrostis curvula	60.77	81.85	88.98	753	forward
CNT30604126	Eragrostis tef	Oryza punctata	72.48	78.43	85.3	898	forward

Expression of CNT30338865

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSDDSTSSVMVFPVRVLTKICMPPLSLSTR*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSRVIVLPVRVFTKICMPPRRRSTRCKVDSFWIL*

Sequence

>CNT30338865
AGACAGATAAGGTTCCATGCTTCTCCGCGCATAATTGTTACACAGTAGACACGATCATAGTAGACTGAAACTAAATAAACGAATTGGACTCGTGAATAGC
AACAGGACGACGACACAATTCAGGCTCCAGCTCCTGCGAGCCCAACAGGACGAAGAGCTTCACTGGCCACCACGGAGGCGCAGCACCAGGTGAAGGGTAG
ACTCCTTCTGAATGTTATAGTCCGCCAGCGTACGACCATCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCCCTCCTTGTC
CTGGATCTTCGCCTTCACATTGTCAATGGTATCAGATGACTCAACCTCCAGGGTGATTGTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCATGCCACCA
CGCAGACGGAGCACAAGGTGCAAGGTGGACTCCTTCTGGATATTGTAATCTGCAAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATGAGGCGCT
GCTGGTCCGGTGGAATACCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATGGTGTCAGATGACTCCACTTCAAGCGTGATGGTCTTTCCGGTCAG
AGTCTTGACAAAAATTTGCATGCCTCCCCTCAGCCTGAGCACAAGGTGAAGGGTGGACTCTTTCTGAATATTGTAGTCAGCCAAGGTGCGACCATCCTCA
AGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATCGTGTCCGAAGACTCAA
CCTCGAGCGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGTGTGGACTCTTTCTGAATGTT
GTAATCAGCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGAATCTTCACCTTA
ACATTGTCGATAGTGTCTGAGGACTCGACCTCAAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCATACCACCCCTGAGCCTCAGCACAA
GGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCAGCAAGCGTCCTCCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGATCCGGAGGGAT
TCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAAT