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Detailed information on CNT30120419


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Citrus clementinaJuglans regia38.2632.3186.24189forward
CNT30698337Citrus clementinaQuercus lobata40.8942.8987.62202forward
CNT30728129Citrus clementinaCorchorus capsularis37.0430.8186.89183forward
CNT30403117Citrus clementinaBeta vulgaris30.5720.0583.44151forward
CNT30628846Citrus clementinaVigna unguiculata33.627.6781.33166forward
CNT30488674Citrus clementinaOlea europaea33.629.3888.55166forward
CNT30708069Citrus clementinaGlycine max16.825.8687.9583forward
CNT3043735Citrus clementinaPrunus dulcis67.4190.9881.38333forward
CNT30565212Citrus clementinaActinidia chinensis35.4321.2683.43175forward
CNT30237247Citrus clementinaBrassica oleracea13.1623.387.6965forward
CNT30145936Citrus clementinaMedicago truncatula24.0918.2583.19119forward
CNT30717645Citrus clementinaMalus domestica golden30.7722.4586.18152forward
CNT30414400Citrus clementinaPapaver somniferum34.6229.1381.29171forward
CNT3029382Citrus clementinaTheobroma cacao35.0230.389.02173forward
CNT3024994Citrus clementinaPopulus trichocarpa38.6631.4187.96191forward
CNT3038944Citrus clementinaCucumis melo33.8143.682.04167forward
CNT30113624Citrus clementinaFicus carica25.115.8482.26124forward

Expression of CNT30120419

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TAKRNDDLFSISPIMLLLASDVLEVDEIKDDVSFFASRFINV*

>peptide 2 (66 aa)
MKSRMMYPSLPHVSSMSDKIQQVQELVELYHHFPLLSASFLVEEVELVVCHWKDLHLYQQEHHQTV*

Sequence

>CNT30120419
ACAGCTAAAAGGAATGATGATTTGTTCTCAATCTCCCCAATCATGTTGCTCCTAGCATCTGATGTATTAGAAGTGGATGAAATCAAGGATGATGTATCCT
TCTTTGCCTCACGTTTCATCAATGTCTGATAAAATTCAACAAGTTCAGGAGCTCGTTGAACTTTATCACCACTTCCCACTCCTCTCGGCAAGCTTCCTGG
TGGAGGAGGTGGAGCTGGTGGTGTGCCACTGGAAGGATTTGCATTTGTACCAGCAGGAGCACCACCAGACGGTTTAGGAGGTGGTCTAAACACTCTAGGA
GGCCTCTTTTCAATTTGGGAAAATTTCATTTTGCTTATTGTTTGAGATTCAGCAGCCCTGTCATCATGTGATTGATCACTTGAATCACCAGAAACTATTG
GCTTCTCTTTTAATAGAGCAAGTTTTGGTGGCAAGGTAGGGTGTTTGGAGTCAAAATTTGAATTGTCACGAAACCTGTAAGCTCTTGCTTTCTC