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Detailed information on CNT3029382


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Theobroma cacaoJuglans regia32.0531.2886.89183forward
CNT30698337Theobroma cacaoQuercus lobata35.3842.8988.61202forward
CNT30728131Theobroma cacaoCorchorus capsularis82.4987.8787.26471forward
CNT30628846Theobroma cacaoVigna unguiculata35.233.581.59201forward
CNT30488674Theobroma cacaoOlea europaea34.3334.6983.16196forward
CNT30708069Theobroma cacaoGlycine max12.9623.0589.1974forward
CNT3043735Theobroma cacaoPrunus dulcis32.055083.61183forward
CNT30565212Theobroma cacaoActinidia chinensis30.8221.3981.25176forward
CNT30651738Theobroma cacaoRosa chinensis25.7427.2780.95147forward
CNT30126429Theobroma cacaoCorymbia citriodora36.0840.3181.07206forward
CNT30717645Theobroma cacaoMalus domestica golden32.2227.1882.07184forward
CNT3024994Theobroma cacaoPopulus trichocarpa28.226.4886.96161forward
CNT30120419Theobroma cacaoCitrus clementina30.335.0289.02173forward

Expression of CNT3029382

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLEKSNLTCPSLPLVSSMFDKIQQVREPGELYHHSLPL*

>peptide 2 (42 aa)
TAKRNDDLFSISPIMLLLASDGLDVGEIKLDVSFFASRFINV*

Sequence

>CNT3029382
ACAGCTAAGAGGAATGACGATCTGTTCTCAATCTCTCCAATCATGTTGCTCCTAGCATCTGATGGATTAGATGTTGGAGAAATCAAACTTGACGTGTCCT
TCTTTGCCTCTCGTTTCATCAATGTTTGATAAAATTCAACAAGTTCGGGAGCCCGGTGAACTTTATCACCACTCCCTGCCTCTCTAGGTAGGCTTCCTGG
AGGAGGGGGCGGCGGTGGTGGAGGCAGCGGCGGCAGGGCACAAGGTAGTGGAGGTGGAGCTGGAGGTTGTCCAGTTGTAGTGGTATTCACACCAGCAGAA
GTACCACCGGCTGGCTTAGGTGGTGGCCTGGGCACCCTAGGTGGTCTCTTTTCAATGTGGGCAAGTTTCATCTTGCTTATTGTTTGAGAATCTACAGCCT
TATCGTCATTGGATTGCCCACTTGAGTCACCAGGAAAAACCGTCCTCTCCTTTATTTGAGCAAGTTTTGGTGGTAAAATTACAGGTTTCTCTCTTTCTGC
TTTTGAACTGAAATTTGACTTGTCTCCAAACCTCTCTGCCCTTGCTTGCTGTGCTTTTTGCTTAATTTGTT