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Detailed information on CNT30565212


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Actinidia chinensisJuglans regia24.9135.0484.39205forward
CNT30698380Actinidia chinensisQuercus lobata17.1335.785.82141forward
CNT30375029Actinidia chinensisArabidopsis thaliana16.8920.1782.01139forward
CNT30728131Actinidia chinensisCorchorus capsularis14.0921.6483.62116forward
CNT30381636Actinidia chinensisManihot esculenta20.1724.9682.53166forward
CNT30525281Actinidia chinensisPhaseolus vulgaris16.6520.9881.02137forward
CNT30628697Actinidia chinensisVigna unguiculata22.2431.9479.78183forward
CNT30488674Actinidia chinensisOlea europaea16.5224.0784.56136forward
CNT30708069Actinidia chinensisGlycine max16.0441.1281.82132forward
CNT3043744Actinidia chinensisPrunus dulcis18.4738.7883.55152forward
CNT3093554Actinidia chinensisSolanum tuberosum10.2122.3484.5284forward
CNT30651738Actinidia chinensisRosa chinensis19.6830.0685.8162forward
CNT30126429Actinidia chinensisCorymbia citriodora16.7727.0180.43138forward
CNT30416557Actinidia chinensisPapaver somniferum14.9523.0385.37123forward
CNT3029382Actinidia chinensisTheobroma cacao21.3930.8281.25176forward
CNT30120419Actinidia chinensisCitrus clementina21.2635.4383.43175forward

Expression of CNT30565212

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MATLSPAFLNIKDSSGPLGLLWLMLALLGEFP

>peptide 2 (31 aa)
PIMLLLASAVLAVDDTNDDVSFLASRFINDW*

>peptide 3 (32 aa)
MCKLHPAHRLRIRCLTVVRLVTCATGDNYFLL*

Sequence

>CNT30565212
CCCCAATCATGTTGCTCCTAGCATCTGCTGTACTGGCTGTTGATGACACCAATGATGACGTATCCTTCTTAGCCTCGCGTTTCATCAACGACTGGTAAAA
CTCAACCAGTTCAGGAGCACGGTGAACTTTGTCACCGCCCCCTCCCCCTCTTGGTAAGCTTCCCGGTGGAGGAGGCGGGCGAGGCGGACCACCAGGTGGA
GGTGGTGGCAATGGTGGAGCAGCAGGTACCCCACTGGCAGGACTAGTATTTGCAGCAACAGGAGCACCTCCAGATGATTTAGGAGGTGGCCGAGGGGTAC
GAGGAGCTCTTTTCTCGATATGTGCAAACTGCATCCTGCTCACCGTTTGAGAATCCGCTGTCTTACCGTCGTTCGACTGGTCACTTGTGCCACTGGAGAC
AATTACTTTCTCCTTTAATTGAGTAAGTTTGGGTGGCAAACTTGGGGGCTTGGCTCTAGACTCGAAGCTAGAATTTAGCTTTGCACCATCGCCAAACCTT
GCTGCTCTTGCTTGGTCAGCTTTTTCCTTGATCTGTTTCTCCCTCTCCAAAGCCAGCTTATGCCGGTCTTTATATGCAGGGTACTTTTCATCTAAAACCC
CTTCAACCGATTTAGACATCAATTGGAACGATGCTGCAACATTGTTGAGAGAGTCACCGCTATAAGACACCTTCGGAGTTTCAGGAGAATCGAGAGCTTC
CTGCTCCGCTTGCCCAAACGTCGTGATGGCTACGCTATCACCAGCATTCCTCAACATCAAGGATTCTAGTGGGCCCCTTGGTCTACTATGGCTTATGCTG
GCCCTACTAGGAGAATTTCCCCC