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Detailed information on CNT3024994


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 8e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Populus trichocarpaJuglans regia28.6229.7485.06174forward
CNT30698337Populus trichocarpaQuercus lobata24.5131.6387.92149forward
CNT30728129Populus trichocarpaCorchorus capsularis22.0422.5683.58134forward
CNT30628846Populus trichocarpaVigna unguiculata25.8226.1780.89157forward
CNT30708069Populus trichocarpaGlycine max13.6525.8685.5483forward
CNT3043735Populus trichocarpaPrunus dulcis27.4745.6385.03167forward
CNT30651738Populus trichocarpaRosa chinensis28.2931.9183.14172forward
CNT30126429Populus trichocarpaCorymbia citriodora27.4732.6885.03167forward
CNT30717645Populus trichocarpaMalus domestica golden24.6722.1684150forward
CNT30621275Populus trichocarpaCajanus cajan12.6624.2985.7177forward
CNT3029382Populus trichocarpaTheobroma cacao26.4828.286.96161forward
CNT30120419Populus trichocarpaCitrus clementina28.7835.4387.43175forward

Expression of CNT3024994

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MLKKSKMMYPSLPRVSSNSDKILLVPEPGELYHHFLLLLASFQVEEVDEVVHQVEEVVVVALHLKDWHL*

>peptide 2 (36 aa)
DLFSISPIMLLRACDTLDVEEIKDDVSFFASRFIKL*

Sequence

>CNT3024994
GATCTGTTCTCAATTTCCCCTATCATGTTGCTGCGAGCATGTGATACATTAGATGTTGAAGAAATCAAAGATGATGTATCCTTCTTTGCCTCGCGTTTCA
TCAAACTCTGATAAAATTCTACTAGTTCCGGAGCCCGGTGAACTTTATCACCACTTCCTGCTCCTCTTGGCAAGCTTCCAGGTGGAGGAGGTGGACGAGG
TGGTCCACCAGGTGGAGGAGGTGGTGGTGGTGGCACTCCACCTGAAGGATTGGCATTTGTAGCAACTGGAGCACCAGCAGATGATTTAGGAGGAGGCCGC
GGCACCCTAGGAGCCCTCTTCTCGGTGTGGGCAAGTTTCATCTTGCTTACTGTCTGCGAATCAACATCCTTACCATCACTAGATTGTTCACTTGACTCAC
CAGAGGCAACTGGTTTCTCTTTTATTTGGGAAAGTTTAGCTGGCAAAGTTATGGGTATAACTTTCTCCCCCTTTGTTCCAAACTGAAAATTTGAACTGTC
ACTAAACTTCACTGCTCTTGCTTTTTCTGCTTTTTCCTTAATATGCTTCTCCCTTTCTAAGGCCAACTTGTGTCTGTCTTTATAGGCAGGATACTTCTCA
TCTAAAAC