Detailed information on CNT30518558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698380Juglans regiaQuercus lobata67.5210087.59395forward
CNT30728129Juglans regiaCorchorus capsularis29.5729.1287.28173forward
CNT30628697Juglans regiaVigna unguiculata60.3461.6179.6353forward
CNT30488674Juglans regiaOlea europaea25.6426.5586150forward
CNT30708069Juglans regiaGlycine max20.3437.0784.03119forward
CNT3043744Juglans regiaPrunus dulcis60.1789.884.38352forward
CNT30565212Juglans regiaActinidia chinensis35.0424.9184.39205forward
CNT30651738Juglans regiaRosa chinensis35.5638.5983.65208forward
CNT30126429Juglans regiaCorymbia citriodora36.2441.4981.13212forward
CNT30717384Juglans regiaMalus domestica golden35.929.5884.76210forward
CNT30621275Juglans regiaCajanus cajan12.1422.490.1471forward
CNT30415484Juglans regiaPapaver somniferum2021.1283.76117forward
CNT3029382Juglans regiaTheobroma cacao31.2832.0586.89183forward
CNT3024994Juglans regiaPopulus trichocarpa61.7159.3882.83361forward
CNT30120419Juglans regiaCitrus clementina32.3138.2686.24189forward
CNT3038944Juglans regiaCucumis melo25.8139.4382.12151forward

Expression of CNT30518558

Peptides detected in this lncRNA

>peptide 1 (34 aa)
FSISPIMLLLASDAFGVEENKDGVSFFASRFIND*

>peptide 2 (75 aa)
SRSPQSCYSWHLMHSVLKKIKMVYPSLPLVSSMTDKIQPVQEPGELYHHSLPLLVGFQVEEVAWVVHQVVVAVEQ*

Sequence

>CNT30518558
GTTCTCGATCTCCCCAATCATGTTACTCCTGGCATCTGATGCATTCGGTGTTGAAGAAAATAAAGATGGTGTATCCTTCTTTGCCTCTCGTTTCATCAAT
GACTGATAAAATTCAACCAGTTCAGGAGCCCGGTGAACTTTATCACCACTCCCTCCCCCTCTTGGTAGGCTTCCAGGTGGAGGAGGTGGCCTGGGTGGTC
CACCAGGTGGTGGTGGCGGTGGAGCAGTAGGTATTCCACCTGGAGGATTTGGATTTTTACCGGCAGAAGAAACTCCAGATGGTTTAGGAGGTGGCCGAGG
CACCCTAGGAGACCTTTTCTCTATGTCAGCAAGTTTCATCTTGCTTATTGTCTGAGAATCAGTCTTGTCGTCATTAGTTTGGTTACCTGAGTCACCAGAT
ACAACCACCTTCTCCTTTATTTTAGCAAGTTTTGGCGGCAAATTTATAGGTCTCTGTCCTTCAACCTTGGATGTAGGGTCACGTAGATTTAAATTTGATT
TGTCACCAAACTTCTCTGCTCTTGCTTGCCCAGCCCTCTCTTTAATTTGCTTCTCCCTTTCTAGGGCCAACTTATGCCTGTCTTT