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Detailed information on CNT30403117


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488674Beta vulgarisOlea europaea15.9421.2483.33120forward
CNT30120419Beta vulgarisCitrus clementina20.0530.5783.44151forward

Expression of CNT30403117

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPAYAGLCMQDTSHLRFLRLILTSAEMKLLHCLVNH*

>peptide 2 (42 aa)
TAKRKVDLFSISPIILLLALAVLEVVDIRVVVSFFASRFIRL*

>peptide 3 (37 aa)
MILVGDVAPWEAFFQFLQVSFCSPLKTQPFYYPQIGH*

Sequence

>CNT30403117
ACTGCTAAGAGGAAGGTTGATCTGTTCTCAATCTCGCCAATCATATTGCTCCTTGCATTAGCTGTATTAGAAGTAGTTGATATCAGAGTTGTTGTATCTT
TCTTTGCCTCCCGCTTCATCAGGCTCTGATAGAATTCAACAACTTCAGGAGCTCTATGAACCTTGTCGTCGTTTCCAGCCCCTCTTGATAGACCTCCTGG
AGGTGGTGGTGGCGGCGGTGGAGGGCCCCCAGATGGTCCTCCAGTGGATAAGCTAACATTTCCACCAGAAGCGCTATTTCCAGATGATTTTGGTGGGGGA
CGTGGCACCCTGGGAGGCCTTCTTTCAATTTCTGCAAGTTTCATTTTGCTCACCGCTGAAGACTCAACCATTTTACTATCCCCAGATTGGTCACTAGTAT
TGTTAGAAACCGGTACCTTCTCCTTTATCTGAGAAAGCTTTGGTGGCAAAGCTACAGATTTCTCTCTTGCCTTGGAATCAGGCTTTAAGCCTGATTTATC
ACCAAACTTCTCCGCTCTTGCTTGCTCTGCCTTCTCTTTAATCTGTTTTTCTCTCTCCAATGCCAGCTTATGCCGGTCTTTGTATGCAGGATACTTCTCA
TCTACGGTTCCTTCGGCTGATTTTGACATCAGCTGAAATGAAGCTGCTACATTGTTTAGTGAATCACTAGAAGGATCCCGTGTTCTAATGCGTGGGAGAT
CTGGGGTTTCGTATCCATCCATGTCTTGTTCTGCCTTACCAAATGAGGTTATT