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Detailed information on CNT30717645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698337Malus domestica goldenQuercus lobata26.1437.5883.62177forward
CNT30728129Malus domestica goldenCorchorus capsularis20.9723.9185.21142forward
CNT30628846Malus domestica goldenVigna unguiculata22.4525.3380.92152forward
CNT30708069Malus domestica goldenGlycine max11.3723.9984.4277forward
CNT3043735Malus domestica goldenPrunus dulcis49.3491.2691.32334forward
CNT3029382Malus domestica goldenTheobroma cacao27.1832.2282.07184forward
CNT3024994Malus domestica goldenPopulus trichocarpa22.1624.6784150forward
CNT30120419Malus domestica goldenCitrus clementina22.4530.7786.18152forward
CNT3038944Malus domestica goldenCucumis melo22.4539.6984.21152forward
CNT30113624Malus domestica goldenFicus carica20.5317.7588.49139forward

Expression of CNT30717645

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MMKILKTMYPSLLHVSSMTDRIQPAQERGVLYHHHLPP*

>peptide 2 (35 aa)
LFSISPIILLLASDTLDDEDIKDDVSFFASRFIND*

Sequence

>CNT30717645
TTTGTTCTCAATCTCCCCAATCATATTGCTCCTCGCATCGGATACATTAGATGATGAAGATATTAAAGACGATGTATCCTTCTTTGCTTCACGTTTCATC
AATGACTGATAGAATTCAACCAGCTCAGGAGCGCGGTGTACTTTATCACCACCACTTGCCCCCTTAGGCAGGCTTCCTGGTGGAGGTGGTACTCCACTTG
GGGGACCGGGAGTTGTACCAACAGGGGCACCTCCAGATGCCTTAGGAGGCGGGCGAGGTACCCGAGGAGGCCTTTTCTCAATTTGGGCAAGTTTCATCTT
GGTTATTACTTGAGGATCAACAGCATTACCATCGGCGTTACCATCATTACTTTGGTTGCTTGAATTGCCAGAAATAACTGCCTTTTCCTTGATATGGGCA
AGTTTTGGTGGTAAAGCTACTGATCTCTCCTTTTCAGCCTTGGCTCTAGGCTCGTAGCTCAAACTTACACTTGATTTGTCGCCAAACTTCTCTACCCTTG
CTTGCTCTGCCCTTTCCTTAATTTGCTTCTCTCTCTCTAAGGCCAACCTATGCCGGTCTTTGTAAGCAGGATATTTCTCATCTAGAACTCCTTCAACTGA
CTTCGACATCAACTGGAAAGATGATGCCACAGAATTAGGTGAGTCGCTAGAAGACATCTGTGTTCTAATGTTCGGAA