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Detailed information on CNT30414400


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 4e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30120419Papaver somniferumCitrus clementina29.1334.6281.29171forward

Expression of CNT30414400

Peptides detected in this lncRNA

>peptide 1 (42 aa)
TANRNVDLFSISPIILLRALAVLDVEEVTNVVSFFASRFIKL*

>peptide 2 (59 aa)
MWYPSLPHVSLNSDRIPLARELGELYHQSLALLTNFQVVVVVVEGLLVALVEEVFHLEN*

Sequence

>CNT30414400
ACAGCTAATAGGAACGTTGATCTGTTCTCGATCTCCCCGATCATATTGCTCCGAGCACTGGCTGTATTGGATGTTGAAGAAGTAACTAATGTGGTATCCT
TCTTTGCCTCACGTTTCATTAAACTCTGATAGAATTCCACTAGCTCGGGAGCTCGGTGAACTTTATCACCAGTCCCTGGCCCTTTTGACAAACTTCCAGG
TGGTGGTGGTGGTGGTGGAGGGCCTCCTGGTGGCCTTGGTGGAGGAGGTATTCCACCTGGAGAATTAGCATTTGCAACAGCAGCACCAGGACCACCACCG
GATGATTTAGGAGGCGGCCTAGGCACCCTTGGAGGCCTTTTTTCAATATCGGCATACTTTATCTTGCTCACAACTTGGGATGCAACTTCAGTAGCATCAT
TATTTGTTTGTTCACCTGAACCACCAGTTACAACGACTTTCTCCTTTATTTTGGCAAGTTTCGGCGGCAAGATTGCAGGCTTCCTATCACCCACCTTTCC
TTGTGAATCAGGGCTTGAATAAACACCAGTGAATCTTTCTGTTCTTGCTTGCTCGGCTTTCTCCTTGATTGCCTTCTCCCTCTCTAA