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Detailed information on CNT30237247


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375854Brassica oleraceaArabidopsis thaliana63.4442.6589.83177forward
CNT30525281Brassica oleraceaPhaseolus vulgaris25.0910.7287.1470forward
CNT30538893Brassica oleraceaBrassica napus62.0129.17100173forward
CNT30311374Brassica oleraceaCamelina sativa31.5426.5992.0588forward
CNT3061202Brassica oleraceaArabidopsis lyrata48.7543.3191.91136forward
CNT3075899Brassica oleraceaBrassica juncea63.4419.8796.61177forward
CNT30612723Brassica oleraceaArabis alpina65.591088.52183forward
CNT30479038Brassica oleraceaArabidopsis halleri63.4429.7589.83177forward
CNT30120419Brassica oleraceaCitrus clementina23.313.1687.6965forward
CNT3038944Brassica oleraceaCucumis melo22.2216.1987.162forward
CNT30113624Brassica oleraceaFicus carica21.157.5488.1459forward
CNT30114813Brassica oleraceaEutrema salsugineum62.0120.8990.75173forward

Expression of CNT30237247

Peptides detected in this lncRNA

>peptide 1 (77 aa)
RFHQSYCSSLQMSYQFLERSEKVNHLSSLHVSSTTDKTQQAQELCELCSRFPLLFQVLQEEVVEEGEVVDHHQAKEV*

>peptide 2 (35 aa)
SISPIILLLASDELPVPGEIREGEPSFFASRFIND*

Sequence

>CNT30237247
CTCGATTTCACCAATCATATTGCTCCTCGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAGAGAAGGTGAACCATCTTTCTTCGCTTCACGTTTCATC
AACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTGCTCCCGCTTCCCGCTCCTCTTCCAAGTGCTCCAGGAGGAGGTGGTGGAGGAGGGG
GAGGTGGTGGACCACCACCAGGCAAAGGAGGTCTAGGGGAAGGCACATTAGTACTTTTACCACCTCCAGCTGATCTAGG