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Detailed information on CNT30728129


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Corchorus capsularisJuglans regia29.1229.5787.28173forward
CNT30698337Corchorus capsularisQuercus lobata28.4535.8886.39169forward
CNT30488674Corchorus capsularisOlea europaea28.6230.0982.94170forward
CNT30708069Corchorus capsularisGlycine max12.4623.0587.8474forward
CNT3043744Corchorus capsularisPrunus dulcis29.1244.1383.82173forward
CNT30717645Corchorus capsularisMalus domestica golden23.9120.9785.21142forward
CNT3024994Corchorus capsularisPopulus trichocarpa28.6227.9682.35170forward
CNT30120419Corchorus capsularisCitrus clementina30.8137.0486.89183forward

Expression of CNT30728129

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PIMLLLASDGFDAGEIKLVVSFFASRFIND*

>peptide 2 (41 aa)
MDSMLEKSNLLCPSLPLVSSMIDKIQQVQELCELYHHCQPL*

Sequence

>CNT30728129
CCAATCATGTTGCTCCTAGCATCTGATGGATTCGATGCTGGAGAAATCAAACTTGTTGTGTCCTTCTTTGCCTCTCGTTTCATCAATGATTGATAAAATT
CAACAAGTTCAGGAGCTCTGTGAACTTTATCACCACTGCCAGCCCCTCTAGGTAGGCTTCCTGGAGGAGGAGGCGGAGCTGGAGGTTTTCCAGTTGTAGC
GGTATTAGCACCAGCAGAGTTGCCACTTGCTGGCTTAGGTGGTGGCCTAGGCACCCTAGGTGGTCTCTTTTCAATGTGTGCGAGTTTCATCTTGCTTATC
ATTTGAGAATCTACAGCCTTATCATCGCCGGATTGCTCACTTGAGTCACCAGGATTAACCGTCCTTTCCTTTATTTGAGCAAGTCTTGGTGGTAACATTA
CAGATTTCTCTCTGTCTGCCTTTGTTCTGGACTCAAAGTTAGAATTGAAATTTGACTTGTCGCCAAACCTCTCTGCCCTTGCTTGCTCTGCTCTTTTTTT
AATATGTTTCTCCCTCTCCATGGCCAACTTGTGGCGGTCTTTATAAGCAGGATATTTTTCCTCTAGAATTCCCTCCACTGACTTAGACATCAAG