Detailed information on CNT3038944


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518558Cucumis meloJuglans regia39.4325.8182.12151forward
CNT30698337Cucumis meloQuercus lobata37.630.5784.72144forward
CNT30525281Cucumis meloPhaseolus vulgaris20.6312.184.8179forward
CNT30488674Cucumis meloOlea europaea20.6313.9888.6179forward
CNT3043735Cucumis meloPrunus dulcis34.235.7986.26131forward
CNT30237247Cucumis meloBrassica oleracea16.1922.2287.162forward
CNT30651738Cucumis meloRosa chinensis39.6928.282.24152forward
CNT30126429Cucumis meloCorymbia citriodora20.3715.2688.4678forward
CNT30717645Cucumis meloMalus domestica golden39.6922.4584.21152forward
CNT30415484Cucumis meloPapaver somniferum20.3714.0884.6278forward
CNT30120419Cucumis meloCitrus clementina43.633.8182.04167forward
CNT30113624Cucumis meloFicus carica20.379.9684.6278forward

Expression of CNT3038944

Peptides detected in this lncRNA

>peptide 1 (39 aa)
RNDDLFSISPIMLLLASDTLDDVEESKGVSFFASRFINV*

>peptide 2 (29 aa)
MNLITTCTFRQASWRRRRTRWWSTRRWRW*

Sequence

>CNT3038944
GAGGAATGATGACCTATTCTCAATCTCCCCAATCATGTTACTTCTAGCATCAGATACATTAGATGACGTAGAAGAAAGTAAAGGAGTATCCTTCTTTGCT
TCTCGTTTCATCAATGTCTGATAGAACTCAACTAACTCAGGAGCTCTATGAACCTTATCACCACCTGCACCTTTAGACAAGCTTCCTGGAGGAGGAGGCG
GACGAGGTGGTGGAGCACCAGGAGGTGGAGGTGGTAGAGGTGGAGCAGCTGGTACACCGCCCTGAGGATTGGGATTTGTGCTTACAGAAGCACCTCCTGA
TGGTCTTGGTGGTGGCTTAGGTGTCCTTGGAGGTCGCTTCTCAATCTCTGCTAGCTTCATCCTGCTGATCGCTGGAGACTCCG